[Freesurfer] Iglesias paper: Hippocampal subfields

Hi! I would like to create a 3D rendering of the hippocampal subfields generated by FreeSurfer (as done in the Iglesias paper). I have tried to do this using Slicer, but the results are not that nice (making a model based on the 1mm mgz file). How were the surfaces in the paper generated? Do you

Re: [Freesurfer] How to run part of TRACULA

Dear Anastasia, Thank you so much for responding so fast! I see what you're saying and thank you for your input. I have one more question if you don't mind taking a moment to respond. I noticed that both trac-all and recon-all include some preprocessing steps (eg. motion correction, eddy current

Re: [Freesurfer] mri_preproc error

Hello Freesurfer Developers, I'm working on group analysis, and I have done GLM analysis(mris_glmfit) on Linux. Next step is to visualize it, so I followed the instruction from the FsTutorial website. freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:annot_outline=1:overlay=l