Hi Freesurfer experts,
I just started to use Freesurfer and I was wondering how can I convert
images from MNI305 which uses Freesurfer to MNI152 which is used by SPM.
We would like to get MNI152 template of Yeo parcelation
(http://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011)
From the names, it looks like both the seg vol and the template vol are both
in mni152. Where did
Yeo2011_17Networks_MNI152_FreeSurferConformed1mm_LiberalMask.nii.gz come from?
One thing you can try is to invert the registration by adding --invertmtx to
the command line.
On 8/2/16 8:18 AM, M
Yes, of course. The upload is now active.
Thank you again for your help,
Isabelle
On 2 Aug 2016, at 08:55,
freesurfer-requ...@nmr.mgh.harvard.edu wrote:
Re:
[Freesurfer] brain mask and T1 are not the same size
___
Freesurfer mailing list
The Freesurfer group is offering a four-day Freesurfer Tutorial and Workshop
September 26th to 29th, 2016 at the Martinos Center in Charlestown, MA. You can
register for the course on our course website:
https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription
Details about the content of th
The Yeo2011_17Networks_MNI152_FreeSurferConformed1mm_LiberalMask.nii.gz
comes from
http://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011,
and the description says it is the FSL MNI152 1mm template interpolated
and intensity normalized into a 256 x 256 x 256 1mm-isotropic volume
Hello All,
We are studying adolescents with HIV and are interested in frontostriatal
tracts (anything from frontal cortex to caudate/putamen/nucleus accumbens) and
tracts connected to the amygdala.
Is anyone aware of DTI based atlases where these tracts are defined in MNI or
some other standa
I have been doing simulations similar to #1 (Eklund) using
surface-based analysis on both thickness and fMRI. I'll prepare a report
of the results, but the early indications are that the same effect is in
play, though it does not look like the effects are as bad as in Eklund.
For thickness ana
The voxel size and dimensions of all three volumes are the same: 256^3
and 1mm^3. Why do you think they are not?
On 08/02/2016 09:17 AM, Isabelle Deschamps wrote:
> Yes, of course. The upload is now active.
>
> Thank you again for your help,
>
> Isabelle
> On 2 Aug 2016, at 08:55, freesurfer-req
Hello,
I am trying to perform between-subject statistics on cortical DTI data in
certain ROIs.
I can do this by overlaying the DTI data on the surfaces on tksurfer, load
and mask the label with the ROI, and then go to File -> Save Overlay. After
doing this for all subjects I can perform statistic
By default they are in talairach. But you can get mni305 by adding
--nofixmni to the surfcluster command line
On 08/02/2016 03:36 PM, Sabin Khadka wrote:
> Hi Doug, Thanks. Are these coordinates in talairach or MNI space? From
> previous post you mentioned these are in mni305 space but if I look
Hi,
I am running a retinotopy analysis using fsfast 5.3. The design has 15 TR
blank before and after wedge presented for 30 TR with 7 repeats, and ring
presented for 24 TR with 7 repeats. Here is my analysis: mkanalysis -s vz -a
rtoy.self.rh -fsd bold -fwhm 2 -nskip 15 -TR 1.5 -retinotopy 48
Hello,
See the paper at this link: http://www.ncbi.nlm.nih.gov/pubmed/25086832
Anthony
> On 8/2/16 12:26 PM, Ritobrato Datta wrote:
>> Hello All,
>>
>> We are studying adolescents with HIV and are interested in
>> frontostriatal tracts (anything from frontal cortex to
>> caudate/putamen/nucleu
Many thanks.
Best
Ri
- Original Message -
From: Anthony Dick
To: freesurfer@nmr.mgh.harvard.edu
Sent: Tue, 02 Aug 2016 18:34:53 -0400 (EDT)
Subject: Re: [Freesurfer] DTI of frontostriatal tracts
Hello,
See the paper at this link: http://www.ncbi.nlm.nih.gov/pubmed/25086832
Anthony
13 matches
Mail list logo
