[Freesurfer] mapping a surface from fsaverage_sym to the subject's native surface

2016-07-03 Thread Ali-Reza Mohammadi-Nejad
Dear Freesurfer experts, Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject. Now, I want to use the “mris_apply_reg” command to map the “left-right   difference” from fsaverage_sym back to the subject's native surface. Unfortunately, I did n

[Freesurfer] Fwd: Failure to use yeo-7/17 networks maps as templates in MRIcron

2016-07-03 Thread Hsiang-Yuan Lin
Hi Prof. Yeo, I have problems utilizing yeo 7/17 cortical network parcellation maps as templates in MRIcron (I aim to use your cortical parcellation maps to underlay my findings in order to derive the implications based on iFC networks). To be specific, there is an orientation problem in the curre

Re: [Freesurfer] Any updates on recon-all GPU support?

2016-07-03 Thread R Edgar
On 2 July 2016 at 19:06, Derek Pisner wrote: > Thanks anyway for taking a look. Despite a number of further tweaks to our > cuda libraries, we have made no further progress with this. Any chance you > could pass along your cuda binaries so that I can see whether they might just > "work"? Very

[Freesurfer] Tissue probability maps from aseg.mgz

2016-07-03 Thread Lee Subin Kristine
Dear FreeSurfers, Is it possible to get tissue probability maps (for the purpose of using them in spm DARTEL, PVElab, etc) out of aseg.mgz? I did read in a previous post (https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2007-October/006384.html) that you can use mri_ca_label with the op