Hi Jiook,
That is a bit weird. What was the error that you got on the left hemisphere?
In any case, 10 mins sounds about right. Does the output segmentation look ok?
Cheers,
Eugenio
Juan Eugenio Iglesias
Honorary Senior Research Associate
Translational Imaging Group
University College Lon
Hi everyone,
There is just a week and a half left before the deadline to sign up for
the FreeSurfer course being held in Copenhagen, Denmark on August 10th
through the 12th. The deadline is June 1st.
We still have a few places left! You can sign up for one here:
https://fscph.nru.dk/regis
Hi Bruce,
Thank you for your reply. I've uploaded the .mgz and surfaces using FTP to
FreeSurfer. Why is it that it may not be possible to get good surfaces with
extensive strokes?
Thank you,
Sabrina
From: freesurfer-boun...@nmr.mgh.harvard.edu
on beha
The log files you can just attach to the email to the list (or to me
directly if there is something in there that you don't want to post)
On 05/20/2016 04:02 PM, Aloi, Joseph wrote:
> Excellent, thank you! To do that, do I send an e-mail to the listserv
> with the log files attached or do I us
Try it without the --reshape option in mri_surf2surf
On 05/20/2016 05:51 PM, Kari Parsons wrote:
> Hi,
>
> I'm trying to get some cortical thickness volumes for an ROI that I
> have (I'm pretty much following the instructions at
> https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCortical
Dear all
I installed freesurfer as supposed for linux (ubuntu). When I tried to run
freeview an error for tcsh occured. Apparenty I fixed that one but still
freeview doesn't start.
Typing the command: "freeview" nothing happens (I did export and source
freesurfer correctly).
Further trying to run
If you seek help with this problem, make sure to send:
1. Your command line:
mri_glmfit --y lh.**G2V2.dods_sm15.mgh --fsgd **.fsgd dods --C
**G2V2.mtx --surf fsaverage lh --cortex --glmdir lh.**G2V2.dods_sm15.glmdir
2. The FSGD file (if using one)
3. And the design matrix above
On 0
because it violates too many of our assumptions about the topology and
geometry of the brain.
cheers
Bruce
On Mon, 23 May 2016, Sabrina Yu
wrote:
>
> Hi Bruce,
>
> Thank you for your reply. I've uploaded the .mgz and surfaces using FTP to
> FreeSurfer. Why is it that it may not be possible to
Thank you for your explanation. Would it be possible to find a workaround? I
want to generate stats on intensity over an ROI for these stroke subjects. For
the brain matter not included in the surface, can I create a volume label file
in freeview instead of trying to edit the surfaces?
Thank y
Have the dicom files changed in any way? In the failure, the problem
maybe that it thinks that the series is truncated (the header thing is
not a problem). Do you still have perms to all the files in that folder?
I noticed in the analysis that succeeded had a bunch of these statements
(never se
Hello,
The files didnt work!
Here is the error after trying 2 participants, one with each mri_segstats you
attached.
same error for both.
Could you please let me know what to do next?
n#-
#@# Curvature Stats rh Tue May 24 08:13:18 JST 2016
/Users/dav
Dear all
I installed freesurfer as supposed for linux of centos 7.
I have a problem with freeview error.
After install was copleteted, Tying the command : "freeview"
-> freeview.bin: error while loading shared libraries: libXss.so.1: cannot
open shared object file: No such file or directory
So
12 matches
Mail list logo
