Hi again,
I noticed that this problem occurred only in freeview. The annotations
are correctly displayed on tksurfer: the labels are shown in the
expected colors and the alpha channel works fine. The surface remains
visible outside the labels and is not black.
My freeview version was 1.0
My FreeS
Hi Doug,
I would like to inquire about the command " mri_binarize". In the past, this
command was able to create a binarized nifti mask from aseg.mgz, wmparc.mgz
etc without the need to convert the output "mgz" files to nifti. In other
words If I want to create a mask for the precentral gyr
Hi Mohamad
can you send us the command lines and screen outputs from doing it both
ways? The output format shouldn't change things - there is no reason you
shouldn't be able to write directly to nifti
cheers
Bruce
On Sat, 12 Mar 2016, Alshikho, Mohamad J. wrote:
Hi Doug,
I would like to
Thanks Bruce for the quick response!
I finally found what is going on. Actually the input file for 6 of my subjects
is badly segmented so I guess that it return empty due to missing labels!
Sorry for the confusion and thanks again
-Original Message-
From: freesurfer-boun...@nmr.mgh.harva
no worries. That makes more sense
Bruce
On Sat, 12 Mar 2016, Alshikho, Mohamad
J. wrote:
Thanks Bruce for the quick response!
I finally found what is going on. Actually the input file for 6 of my subjects
is badly segmented so I guess that it return empty due to missing labels!
Sorry for the
Hi there
I have two questions regarding using the labels with tksurfer:
1. What exactly has been done to change the .label (e.g. lh BA44.label) to
.thresh.label (e.g. lh BA44.thresh.label?
2. The instructions on this page
https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps
to overlay th
