Hi Zeke,
We tried the new version of mri_cc and we still do not get 12 segments of
the corpus callosum when we open the aseg.12segmentsCC.mgz in a viewer.
Could you send us the script you launch after the recon_all to get aseg.mgz
files with 12 segments? basically the mri_cc
Could you also pleas
Hi,
I'm sitting on a bunch of data that requires quality control (QC). While there are several guidelines for skullstrip or gray/white matter segmentation QC, I couldn't find anything on subcortical QC. As far as I know freesurfer classifies the different structures probabilistically using a
Dear freesurfer experts,
I want to calculate the distance between two vertices which are
located on different hemispheres. I was wondering how I could do this
with mris_pmake because a hemisphere is required within the analysis.
Is there any possibility to obtain the distance between a verti
Hi Genevieve
are you sure you are using the correct mri_cc? I used your command line
and got 12 segments. How many segents do you get? It should generate
segments numbered 230-241 I think. You'll need to make your own entries in
the ColorLUT.txt file if you want to see them in prespecified col
Hi Jurij
no sorry, that sounds like a research project!
cheers
Bruce
On Fri, 27 Nov 2015, Jurij
Wiede wrote:
Hi,
I'm sitting on a bunch of data that requires quality control (QC). While there
are several guidelines for
skullstrip or gray/white matter segmentation QC, I couldn't find an
Hi - sounds like it's running out of memory and getting killed. How much
RAM do you have?
On Thu, Nov 26, 2015 at 1:21 PM, salvatoreandrea...@libero.it <
salvatoreandrea...@libero.it> wrote:
> Hi!
> - I am using Ubuntu 14.4 (trusty).
>
> - This is my subject directory: /home/salvatore/freesurfer
Hi Bruce,
I'm sure about it, but I get the error.
*Best Regards,*
*Neda*
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Hi Freesurfers,
I'm having some issues running mri_glmfit using a simple custom GLM file.
I've double checked to make sure the subject session file passed to
isxconcat-sess is the same as the fsgd file and also checked the formatting
corresponds with what is posted online however I keep getting th
looks like you created the fsgd file under windows? There are a bunch of
carriage returns (look like ^M in the file). Try using a simple text
editor under linux.
On 11/27/15 2:32 PM, Shady El Damaty wrote:
Hi Freesurfers,
I'm having some issues running mri_glmfit using a simple custom GLM
Hi expert,
Thank you for your reply. I had read the example tables, but I'm still not sure
how to alter them into my analysis.Can you help me to check the matrix I
designed and point out my mistakes? Thanks in advence.
3 classes ( A / B / C group) and 4 variables (gender, age, education, and Moca
Dear experts:
In examining QDEC results of a contrast of interest, I
noticed the results are mainly in cold color (blue), with only two small
clusters in warm color (red). When I proceeded with Monte Carlo simulation, if
I chose the abs as the sign option in simulation, then no clusters survive
Hello Neda,
Hello Neda,
Can you please send me an email with a copy of your .license file as an
attachment? *Please send it to my direct email address* and not to the
Freesurfer support list. I will take a look and send you a valid license
file if necessary.
-Zeke
> Hi Bruce,
>
> I'm sure abo
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