Re: [Freesurfer] 3T or nuintensitycor3t

Hi Lee, Do you recommend its use (i.e. both the -nuintensitycor3t flag and the 3T atlas for Talariach alignment)? Where can i find the documentation for the usage of -3T flag? Best, Kasper 2015-11-06 18:47 GMT+01:00 Lee Tirrell : > Hi Kasper, > > The -3T flag uses a special 3T atlas for Talair

[Freesurfer] node coordinates

Dear experts, I defined 84 regions obtained from the aparc+aseg.mgz file as my nodes for later graph analysis. For visualization purposes, I want to assign each node the corresponding MNI coordinates. Can you please help me how I can do this? Is this documented somewhere? Many thanks for your

Re: [Freesurfer] node coordinates

Hi Andre You can apply the transform in the talairach.xfm to the node coords. Not sure if we have anything to do this by default - Doug would know cheers Bruce On Sat, 7 Nov 2015, André Schmidt wrote: Dear experts, I defined 84 regions obtained from the aparc+aseg.mgz file as my nodes fo

[Freesurfer] R: Re: R: Re: R: Re: average z-score of each subject from a common cluster

Thanks. But what's meaning "colheader"? In my cache.th13.neg.sig.masked.nii.gz I have only a significant ROI. In the summary file there are five column and 5 different value of "mean". Which is the correct, expressing the mean z-score of the cluster? Stefano >Messaggio originale >Da: gr.