[Freesurfer] FreeSurfer downloading

2015-09-14 Thread Sahil Bajaj
Hi there, This is SAHIL BAJAJ, a postdoc fellow from Houston Methodist Research Institute. I have been trying to download Freesurfer for my linux machine but somehow the link on the website- http://freesurfer.net/fswiki/Download is not opening, I would really appreciate any help. Thanks, Sahil -

Re: [Freesurfer] Questions about the correction methods in Surfstat

2015-09-14 Thread dgw
Hi Feng, This is not the surfstat list. You may want to check their webpage to see how to get help and documentation. hth d On Sun, Sep 13, 2015 at 9:36 AM, chenhf_uestc wrote: > Dear Surfstat Users, > > I have a question about the RFT correction method in the > Surfstat(http://www.math.mcgill.

[Freesurfer] How to create a FSGD file

2015-09-14 Thread nellie
Dear Freesurfer engineers, According to the introduction of Wiki, I know the exact structure of a legal FSGD file. However, I still don't know how to create a FSGD file, for example, using which command or through which way to create it? Hoping for your reply. Thanks a lot ! Best wishes,

Re: [Freesurfer] White matter volume

2015-09-14 Thread Douglas Greve
The values in wmparc.stats will have partial volume correction. The onesfrom fslstats will not. On 9/12/15 3:44 PM, John Anderson wrote: Hi Bruce, Kindly I want to inquire about the _difference between_ white matter volume generated by freesurfer ( specifically the white matter parcellation

Re: [Freesurfer] How to create a FSGD file

2015-09-14 Thread Douglas Greve
Create it with a text editor, there is no command. On 9/14/15 9:37 AM, nellie wrote: Dear Freesurfer engineers, According to the introduction of Wiki, I know theexact structure of alegal FSGD file. However, I still don't know how to create a FSGD file, for example, using which command or t

[Freesurfer] subject specific ROI

2015-09-14 Thread Jinsong Tang
Hello, I want to use FreeSurfer to create subject specific ROI for left insua. The lable number is 1035. I use: mri_convert -rl rawavg.mgz -rt nearest aparc+aseg.mgz aparc+aseg2raw.nii.gz fslmaths aparc+aseg2raw.nii.gz -uthr 1035 -thr 1035 l_ins_fs_rawavg.nii.gz I found the label is different b