Thank you very much.My mask is in .nii.gz. How can I transform it in .mgz?
Should I do it?
Stefano
Messaggio originale
Da: gr...@nmr.mgh.harvard.edu
Data: 30-giu-2015 0.36
A:
Ogg: Re: [Freesurfer] Import mask from FSL to FS for performing seed-based
FS-FAST functional connectivity
Hi
You can use mri_convert
Van: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Namens std...@virgilio.it
Verzonden: zondag 12 juli 2015 11:07
Aan: freesurfer@nmr.mgh.harvard.edu
Onderwerp: [Freesurfer] R: Re: Import mask from FSL to FS for performing
seed-
Dear FreeSurfer-experts,
Unfortunately, nobody replied to my question so this is a repost (see the
original question below). Could anybody please give some advise on how to
proceed? The deadline for the revisions is drawing near, so any help is greatly
appreciated!
Best wishes,
Niels
you can change formats with mri_convert:
mri_convert vol.nii.gz vol.mgz
but you shouldn't need to - all our tools will read nifti just fine. Doug's
question was whether your mask was in the right coordinates, regardless of
whether it was in mgz or nifti.
cheers
Bruce
On Sun, 12 Jul 2015,
Hi Niels
is that the entire error? Does it not say what volume produces the error?
That was a bug we had briefly some time ago, but I didn't think it made it
into anything we released. If you can track down which volume is causing
this problem you can just load it into matlab with load_mgh.m
