Re: [Freesurfer] 2D sphere co-ordinates

2015-07-05 Thread jonathan oron
That worked perfectly! Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you beli

Re: [Freesurfer] mni152reg

2015-07-05 Thread OKADA NAOHIRO
Hello Doug, Thank you for your reply.I'm using version 1.9 of mni152reg, which is located at http://ftp.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/mni152reg. Best, Nao > Date: Mon, 29 Jun 2015 18:58:28 -0400 > From: gr...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu > Subje

[Freesurfer] mri_label2vol in matlab

2015-07-05 Thread jonathan oron
Hi Freesurfer experts, I have a label with 1500+ vertices I'd like to convert to a nifti file. Right now I use mri_label2vol and output a file I'd like to do this in matlab, is there any way? More specifically, I'd like to get the native co-ordinate for each vertex in the nifti file. The vox2ras co

[Freesurfer] TRACULA analyses in glmfit

2015-07-05 Thread Pedro Rosa - GMail
Dear Developers, Tracula’s Statistics wiki suggests one to use the statistical software of choice. Could it be glmfit? For that, I think I would need to concatenate each tract-by-voxel diffusion data from each subject (e.g., each diffusion data of course separately) in common space (e.g., MNI)

Re: [Freesurfer] basic request on cortical thickness analysis

2015-07-05 Thread Bruce Fischl
Hi Alessandro you can do it either way. qdec gives you a GUI interface to guide you through the process, but is limited in terms of the hypotheses you can test with it. You can choose to smooth or not either way cheers Bruce On Sat, 4 Jul 2015, Alessandro Calamuneri wrote: > Hi freesurfer use