[Freesurfer] [FreeSurfer] Multiple overlays on surface

Dear FreeSurfer's experts, I would like to visualize on freeview two overlays on fsaverage cortical surface. I have used the code below found on the mailing list : *mri_binarize --i sig1.mgh --min 0.1 --binval 1 --o sig1_th.mghmri_binarize --i sig2.mgh --min 0.1 --binval 2 --o sig2_th.mgh*

[Freesurfer] Comparing aparc labels with volume ROIs in MNI152 2mm space

Hi guys, I want to overlay an ROI mask created in FSL in the MNI152 2mm volume space (from a metaanalysis) with the aparc labels in Freesurfer to compare the two ROI schemes (so I can have justification for picking some of the Freesurfer ROIs for analyses). I'm thinking of running the MNI152 2mm

Re: [Freesurfer] [FreeSurfer] Multiple overlays on surface

Try it with 0 0 0 instead of 128 128 128 On 06/05/2015 07:44 AM, Matthieu Vanhoutte wrote: > Dear FreeSurfer's experts, > > I would like to visualize on freeview two overlays on fsaverage > cortical surface. > > I have used the code below found on the mailing list : > > /mri_binarize --i sig1.mgh

Re: [Freesurfer] [FreeSurfer] Multiple overlays on surface

I tried it but gave me a black surface. Le 6 juin 2015 00:06, "Douglas N Greve" a écrit : > Try it with 0 0 0 instead of 128 128 128 > > On 06/05/2015 07:44 AM, Matthieu Vanhoutte wrote: > > Dear FreeSurfer's experts, > > > > I would like to visualize on freeview two overlays on fsaverage > > cor

Re: [Freesurfer] [FreeSurfer] Multiple overlays on surface

what is the terminal output for mris_seg2annot? On 06/05/2015 06:12 PM, Matthieu Vanhoutte wrote: > > I tried it but gave me a black surface. > > Le 6 juin 2015 00:06, "Douglas N Greve" > a écrit : > > Try it with 0 0 0 instead of 128 128 128 > > On 06/05