All right, I have found the load_mgh function at
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat?action=AttachFile&do=view&target=load_mgh.mThank
you so much!!
But I cannot get a full understand on its usage. In particular, the "fname"
option is obvious, but i cannot understand th
Hi Freesurfers,
Hope you're doing well! I tried creating a reconstruction yesterday but got an
error.
1)BI22
2)recon-all -autorecon1 -autorecon2 -autorecon3 -subject BI22_SurferOutput -i
/autofs/space/huygens_001/users/mia/subjects/BI22_PreOp_MRI/8961/8968/896583
3)
ERROR: talairach_afd: Talai
Mia,
Hi, I took a quick look at your BI22_SurferOutput/mri/orig/001.mgz and
the problem appears to be with this input. The orientation is wrong,
and it doesnt quite look like an mprage or equivalent. Unfortunately,
after looking through your dicom series, it doesnt look like any of them
are idea
On Sun, 17 May 2015, nellie wrote:
Hi Amolie,
I looked at your recon-all comand, and it looks like you used the -i flag for
each .dcm file for your subject's mri scan. You only need to pass one of these
files to recon-all, and it will find the rest of them in the DICOM series. For
example, you
those are optional - just give it the filename. So it should be:
[vol, M, mr_parms] = load_mgh('lh.thickness.fwhm10.fsaverage.mgh
then vol will be the 1-based array of thickness values
cheers
Bruce
On Sun, 17 May 2015, LiuKai
wrote:
All right, I have found the load_mgh functionat
https://s
Thanks, Nick! I'll plan to try to series you suggested then.
Fingers crossed,
Mia
> On May 17, 2015, at 3:03 PM, "Nick Schmansky, MGH"
> wrote:
>
> Mia,
>
> Hi, I took a quick look at your BI22_SurferOutput/mri/orig/001.mgz and
> the problem appears to be with this input. The orientatio
Hi,
I am trying to combine 236 labels into one volume (for the left
hemisphere). However after 233 volumes I get an 'Segmentation fault (core
dumped)' which I believe is related to a memory issue. If it is relevant I
am using a GIFTI image as the surface (I am using HCP data).
mri_label2vol $(cat
Hi Annie,
I am a little unsure why this might happen. Did you inspect if
$SUBJECTS_DIR/5204/label/lh.Yeo2011_17Networks_N1000.annot is correct?
Cheers,
Thomas
On Mon, May 18, 2015 at 1:52 PM, 陳昱潔 wrote:
> Hi Dr. Yeo :
>
> Thank you very much for helping us a lot!
> I ran the command this below:
