Ty Doug,
Kind regards,
Egil
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N Greve
Sent: 23 March 2015 17:45
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Question regarding Qdec vs mri_glmfit outputs
Use the result
Ty Doug,
That gives 8 regressors, so it seems reasonable.
Kind regards,
Egil
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N Greve
Sent: 23 March 2015 17:44
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Question re
Hello Alicia,
If you upload your subject I can take a look.
It would be helpful to me if you could also let me know where you made
the edits that did not take effect.
Thank you!
Ani
On 03/23/2015 01:44 PM, Yu-Hsuan (Alicia) Chang wrote:
Dear FreeSurfer,
I edited the pial surface ba
Hello,
I would like to conduct a surface-based analysis with resting-state data
using SPM's CONN toolbox v14.0. Is there a way to combine the three
preprocessed freesurfer files (lh, rh, mni305) into one file? CONN seems to
only accept one file, or files that have exactly the same dimensions.
Th
Hello FreeSurfer exports,
I have two questions regarding recon-all flags:
1) Our data was obtained with a 3T scanner. Would you recommend that all 3T
data be run thorough the recon-all stream with the -3T flag?
2) One subject has part of the left occipital lobe cut during the
skullstripping pr
Dear Freesurfer users,
I have attempted to process a subject (.nii type input) through recon-all
-all, but for some reason the processing gambit is terminated early (
during the skullstrip).
During skullstripping the following warning appears twice:
IFLAG= -1 LINE
__
Dear Freesurfer users,
I have attempted to process a subject (.nii type input) through recon-all
-all, but for some reason the processing gambit is terminated early (
during the skullstrip).
During skullstripping the following warning appears twice:
IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTAT
Dr. Greve,
Thank you for your response. I am not using a windows machine for freesurfer
but a Mac with OS 10.8.5 running Freesurfer V 5.3.0. I created a new .fsgd as
outlined in your previous response and am still receiving an identical error
message. Is it possible that there is an error with
The error is in the fsgd file. Can you send it to me?
On 03/24/2015 05:16 PM, Elrod, Christian - SJHMC wrote:
> Dr. Greve,
>
> Thank you for your response. I am not using a windows machine for freesurfer
> but a Mac with OS 10.8.5 running Freesurfer V 5.3.0. I created a new .fsgd as
> outlined i
Yes. I attached the original and the newly created one to this email.
Thanks,
Taylor Elrod
Research Assistant
Human Brain Imaging Lab
Barrow Neurological Institute
Dignity Health
St. Joseph's Hospital and Medical Center
222 West Thomas Rd
Phoenix, AZ 85013
(O) 602-746-4494
_
Hi Edgar
the LINE SEARCH thing is not a real problem. I've never seen "indices out
of bounds" before though. Is there anything strange about your dataset?
Does freeview display it properly (that is, are what freeview thinks the
RAS dirs the correct anatomical ones)? If you upload the dataset w
I've created a new script to remove the carriage returns in your file.
You can get it from here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/rmcr
copy it into $FREESURFER_HOME/bin (or anywhere in your path), rehash,
then run
rmcr ABIDE_10K_2.fsgd > new.ABIDE_10K_2.fsgd
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