Dear freesurfer experts,
I searched on the wiki but can not figure out how to solve this problem: I
found some significant clusters on graymatter thickness, how can I use it as a
ROI in my functional MRI study?
I have both structure and function data of the same subjects, so I can either
do it
Hi Martin,
I appear to have run into an issue when processing longitudinal data with the
-hippo-subfields command. I get the following error. I have run the process in
the cross (independent) mode and it ran okay at each time point (I have two).
Wrote out aseg_thresholded.mgz
kvlMathematicalM
Hi Chunhui
if you have the significant clusters as overlays in fsaverage you can
load them in tksurfer and use the "custom fill" button to create ROIs
from connected compontents that are above threshold, then go from there
(e.g. mri_label2label to map them to individual subjects, etc...)
che
Sorry, forgot to say that I tried the -long option for two time points without
the -hippo-subields option and it completed without errors.
Thanks again
Erik
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Erik O
Hi Erik,
did you experience the same problem with any other cases?
Also, do you think you could send us the log file
[subjectdir]/scripts/hippo-subfields.log, as well as the contents of
[subjectdir]/tmp/subrieldResults?
Cheers,
/Eugenio
Juan Eugenio Iglesias
Postdoctoral researcher BCBL
www.jeig
Hi Eugenio,
Should I send the files via dropbox, as it appears that the last one I sent is
waiting approval due to size etc.
Thanks and sorry for the hassle
Erik
From: Erik O'Hanlon
Sent: 20 November 2014 15:51
To: Freesurfer support list
Subject: RE: [
FDR
doug
On 11/20/2014 01:31 AM, wangzhiwei3233 wrote:
> Hi freesurfer experts,
>
> Is there other methods for multiple comparison correction apart from
> Monte carlo simulation in Freesurfer?
>
> Thanks!
>
> zhiwei
>
>
>
>
> ___
> Freesurfer mailing lis
Dear freesurfer experts,
Is there any way to down resample the native surface mesh and register the
functional volume data to the down resampled surface in freesurfer?
Many thanks,
Ting
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Dear FreeSurfer experts,
I get a new message when I use "mri_convert" command to convert dicom to
mgz. I used to apply this command before and there was no problem. I wonder
what is the reason that I get the new message. In addition, it does not
create mgz file, and goes to infinite loop.
*mri_c
Hi Piotr,
There are several tutorials that describe our standard data processing
pipeline. You can start by looking at:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial
with "Introduction to Freesurfer" and "Analyzing the Individual Subject".
If you have any further questions, please, se
Hi Tim
can you elaborate what the issue is? If you have binary lesion maps inthe
volume, can't you just sample those onto the surface and measure surface
area directly? I think I am missing something
Bruce
On Wed, 19 Nov 2014, Timothy
Meier wrote:
Hello,
I just wanted to repost this to se
Hi there,
In my understanding, mris_convert does not change any information (vertices
coordinates and triangles) during converting, right? However, I observed
odd thing as bellow,
Command I used:* mris_convert subjid/surf/lh.white subjid/surf/lh.white.stl*
I convert the white surface to .stl for
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