Re: [Freesurfer] Visualizing individual ROI labels

2014-10-05 Thread Bruce Fischl
Hi Elissa, you can load the labels into tksurfer or freeview and give them whatever color you like. Is that what you are trying to do? I think that's how Rahul created the figures in that paper. cheers Bruce On Sat, 4 Oct 2014, Elissa McIntosh wrote: Hello freesurfer experts, I am hoping

[Freesurfer] Gyrification index vs cortical surface area

2014-10-05 Thread Knut J Bjuland
Dear FreeSurfer experts I have run analyses on gyrification index. I was wondering if anybody could tell me what exactly is the relationship between gyrification index and cortical area. My gyrification results and area results are to a large extent similar. Am I measuring approximately the sam

[Freesurfer] rawfunc2surf-sess with a limited set of surface files

2014-10-05 Thread Reza Rajimehr
Hi, I want to use rawfunc2surf-sess to project the functional data onto the surface in the source subject and then in the target subject. My source subject has been processed in Freesurfer. However, my target subject has been processed in Caret, so I do not have all the surface files for the targe

Re: [Freesurfer] White matter and white matter lesions

2014-10-05 Thread Leise Borg
Hi Douglas Thanks for your answers. I have two more questions: 1) In which file(s) do I find the labels 151-255? 2) What do the columns of zeros and the numbers 64, 112, 160, 208 and 255 in your answer mean? Leise -Original Message- From: Douglas Greve [mailto:gr...@nmr.mgh.harvard.e