[Freesurfer] using wm edits and control points at the same run

2014-07-06 Thread james pardon
Hi, In a subject that I need to edit both wm.mgz and add some control points, I'm wondering what is the correct recon-all options so that all changes are applied in on additional run? I noticed that I could overwrite changes made by one or the other if I run them in tandem (and not simultaneously)

Re: [Freesurfer] using wm edits and control points at the same run

2014-07-06 Thread Bruce Fischl
Hi James if you run -autorecon2-cp -autorecon3 it will use both sets of edits cheers Bruce On Sun, 6 Jul 2014, james pardon wrote: Hi, In a subject that I need to edit both wm.mgz and add some control points, I'm wondering what is the correct recon-all options so that all changes are applied

Re: [Freesurfer] problems with Surface-based Interhemispheric Registration

2014-07-06 Thread angela . favaro
Hi Adam, thank you for your mail. I am quite demoralized because I cannot get out of my problem and I am not receiving support from the mailing list. Which is, according to you, the solution? Do I need to install 5.3 version and re-analyse all my subjects from the beginning? Or do you think that I