[Freesurfer] Postdoc opening in multimodal human brain mapping/modulation & epilepsy

Post doctoral position available for research using a multimodal approach to investigate brain organization and function at the Hofstra University-North Shore LIJ School of Medicine in partnership with the Feinstein Institute for Medical Research. Studies involve surgical epilepsy patients undergoi

[Freesurfer] Using the Longitudinal Pipeline

Colleagues, We are preparing to perform longitudinal pilot studies a group of subjects and controls under far less than ideal conditions. The initial MRI scans were done clinically on a 1.5T Siemens scanner using the ADNI Siemens scanning protocol. The follow-up scans need to be done on a 3.0

Re: [Freesurfer] Basename error

Hi Doug Thanks for you response. The command line is: selxavg3-sess -s subject_0101 -d . -analysis DoD_looming_lh. I checked the basename function in the matlab installed in my computer, which is 2010b. It seems that the basename in the 2010b matlab only accepts one parameter. I tried two way

[Freesurfer] Alzheimer's Disease Sage/DREAM Challenge

The Alzheimer's Disease Sage/DREAM Challenge #1 (AD#1) launched earlier this month! The goal of the AD#1 is to apply an open science approach to rapidly identify accurate predictive AD biomarkers that can be used by the scientific, industrial and regulatory communities to improve AD diagnosis and

[Freesurfer] Fwd: Alzheimer's Disease Sage/DREAM Challenge

The Alzheimer's Disease Sage/DREAM Challenge #1 (AD#1) launched earlier this month! The goal of the AD#1 is to apply an open science approach to rapidly identify accurate predictive AD biomarkers that can be used by the scientific, industrial and regulatory communities to improve AD diagnosis and

Re: [Freesurfer] Fwd: mpr2mni305 failed, see transforms/talairach_avi.log

Hi Bruce, Thanks very much. I will wait for Avi Synder's response. Thanks a lot Venkat On Sat, Jun 21, 2014 at 8:23 PM, Bruce Fischl wrote: > Hi Venkat > > I'll cc Avi Snyder. Avi: do you know what this error message means? > > thanks > Bruce > > > On Sat, 21 Jun 2014, Venkateswaran Rajagopa

[Freesurfer] low polygon count like fsaverage3

Hello again, I am still looking for a way to create a low polygon surface during recon-all (where labels still fit). Is there any (expert) option where I can specify the number of vertices or distance between vertices? How was fsaverage3 (very low polygon count) was created? Best regards, Kai ___