Re: [Freesurfer] Viewing functional data on the inflated brain

2014-05-18 Thread Sherryse Corrow
Hi Douglas, Okay, trying again. Problem: When we run the command line below, and then open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init. Command Line: Reg-feat2anat -feat OurFeatDirectory.feat -s

Re: [Freesurfer] Rotated structurals

2014-05-18 Thread Bruce Fischl
No, they should be fine as is Bruce > On May 18, 2014, at 5:00 PM, Tudor Popescu wrote: > > Hi everyone > > Are structurals that come out of the scanner somewhat rotated (a few degrees, > but still visible, example - attached) processed normally by recon-all, or do > they first have to be man

[Freesurfer] aparcstats2table for functional overlay

2014-05-18 Thread Jonathan DuBois
Hi all, I was wondering if there was a script like aparcstats2table that would accept a functional overlay file that has been sampled to the surface as a measure instead of the available options for structural measures? In tksurfer there is a manual way to average over an ROI using the sig.mgh an