[Freesurfer] ROI in FreeSurferColorLUT.txt

Hi list, I'm noting these regions in FreeSurferColorLUT.txt. How can I obtained structural information from them? 8001 Thalamus-Anterior 74 130 181 0 8002 Thalamus-Ventral-anterior 242 241 240 0 8003 Thalamus-Lateral-dorsal

[Freesurfer] repost: mri_convert Siemens Skyra .IMA CentOS5.7 FS5.3

Hi, I am still having some concerns using mri_convert on Skyra volumes that I'm hoping can please be addressed. On this occasion I have used mri_convert to convert a single dicom file to nifti from a volume collected on a siemens Skyra scanner using Freesurfer5.3 on CentOS5.7. When viewing t

Re: [Freesurfer] ROI in FreeSurferColorLUT.txt

Hi Stefano sorry, those are not ready yet, and the tracts do come from tracula Bruce On Mon, 28 Apr 2014, std...@virgilio.it wrote: Hi list,  I'm noting these regions in FreeSurferColorLUT.txt. How can I obtained structural information from them? 8001 Thalamus-Anterior

Re: [Freesurfer] repost: mri_convert Siemens Skyra .IMA CentOS5.7 FS5.3

Hi Paul perhaps Ruopeng can comment, but I suspect this isn't a problem - it's just showing it to you in a standard anatomical space not the slice spaceit was acquired in. If you want to upload the dataset we can take a look and confirm cheers Bruce On Sun, 27 Apr 2014, prasser wrote: > Hi,

[Freesurfer] Xhemi: vertex-wise volume asymmetry analysis?

Dear freesurfer experts, I am working on a project on cortical asymmetry and I have analyzed vertex-wise cortical thickness/surface area asymmetry. However, I noticed that Freesurfer doesn't not seem to facilitate such analysis for gray matter volume, as after running surfreg -xhemi there is no ?h

[Freesurfer] HBM Hackathon - please distribute widely !

The 2014 Hackathon registration is open! This unique 3-day event (June 5-7) will be held prior to annual meeting of the Organization for Human Bra

Re: [Freesurfer] repost: mri_convert Siemens Skyra .IMA CentOS5.7 FS5.3

Thanks for your reply. Yes, I can upload the data. Is there a private area I can upload to? Also, is there a flag that enables acquisition slice space info to be used with tkmedit? Lastly, when converting to .nii with other packages and viewing with tkmedit the acquisition slice space seems t