Re: [Freesurfer] Fwd: freeview error

2013-12-31 Thread Ruopeng Wang
Hi Rujing, Your hardware setup does sound a bit insufficient to run freeview smoothly. But I don't think that is the reason "configure overlay" hangs. Would it be possible to send us the files used in your command? Best, Ruopeng On Dec 31, 2013, at 1:04 AM, rujing cha wrote: > Hi Bruce and

[Freesurfer] Obtaining the center of mass coordinates of a label file

2013-12-31 Thread Omar Singleton
Dear Freesurfer Community, Does anyone know of a way to get the coordinates of the center of mass of a FreeSurfer label? Is there any way of doing this? Thanks! Best, Omar ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.

Re: [Freesurfer] Fwd: freeview error

2013-12-31 Thread Rujing Zha
Dear Ruopeng, Thanks for your help, Ruopeng.I learned the groupanalysis by manu of http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis. I ran this command on your tutorial data (buckner data). Would you please tell me where my hardware setup is inappropriate? Thanks. All the best.

[Freesurfer] missing libnetcdf.so.6 on ubuntu for TRACULA

2013-12-31 Thread Salil Soman
Dear Anastasia, I am using the latest tracula code (CentOS 6 64 bit on an ubuntu 13 machine) and FS 5.3 to rerun cases I had processed with the previous version of tracula using the new code and am getting the following errors: *freesurfer/bin/dmri_motion: error while loading shared libraries: l