Thank you very much!
I will try again following your directions and I'll let you know.
Best,
Pietro
2013/11/19 Louis Nicholas Vinke
> Hi Pietro,
> I think you should try redoing the control points from scratch, but with
> fewer control points and sparser placement. Currently you have 198 co
Allright; I digged further and further, and finally found out that the
sform of our T1 weighted image gets crushed during a lesion filling step
earlier in the pipeline. I never recognized this while using FLIRT, maybe
because FLIRT uses a different initialization (COG?) than using the header
tr
Hi,
I am trying to save a nifti file using save_nifti. I'm running into a strange
problem that I describe below.
I have a nifti file (subj_mask.nii) created by a colleague using Nibabel
(http://nipy.sourceforge.net/nibabel/). This volume is in the MNI305 space.
Step1: In a first step I wan
Thank you for the prompt response. You sent exactly what I wanted. Everything
worked great!
Brian
-Original Message-
From: Allison Stevens [mailto:astev...@nmr.mgh.harvard.edu]
Sent: Tuesday, November 19, 2013 8:03 AM
To: Gregg, Brian E.
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: R
Hello Ruth,
That is the correct link. I have accessed the link from multiple
networks and I am never prompted for a login and/or password so I am not
sure why you would be. Can you try from another network? And just so we
are clear, here is the link:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/f
Dear FS experts,I am forwarding my question (please see below), in case it got
lost among the intense flow of messages.Thank you for your consideration.Pablo
From: pablon...@hotmail.com
To: freesurfer@nmr.mgh.harvard.edu
Date: Mon, 18 Nov 2013 16:38:41 +
Subject: [Freesurfer] Compatibility be
Hi Pablo,
you shouldn't mix different OS-s or software version in the same study
(Gronenschild,
E. H. B. M., Habets, P., Jacobs, H. I. L., Mengelers, R., Rozendaal, N.,
van Os, J., & Marcelis, M. (2012). The effects of FreeSurfer version,
workstation type, and Macintosh operating system version on
Dear Gari,Thank you for the advice. One additional question. Considering that I
will start from scratch the processing in the CentOS 6, which would be the
recommended FS version for CentOS 6?Thanks,Pablo
From: gariko...@gmail.com
Date: Wed, 20 Nov 2013 18:23:40 +0100
To: pablon...@hotmail.com
CC
I have RedHat 6 with Freesurfer 5.3 for CentOS 6, I can't think in any
reason to not use this version in your CentOS 6, if you have some other
requirements maybe Nick or Zeke could help you better, I am just an user :)
On Wed, Nov 20, 2013 at 6:47 PM, pablo najt wrote:
> Dear Gari,
> Thank you
I have to agree with Gari, I see no reason for you to not use the
CentOS6 build.
-Zeke
On 11/20/2013 12:52 PM, Garikoitz Lerma-Usabiaga wrote:
> I have RedHat 6 with Freesurfer 5.3 for CentOS 6, I can't think in any
> reason to not use this version in your CentOS 6, if you have some other
> requ
Thanks,Pablo
> Date: Wed, 20 Nov 2013 13:11:15 -0500
> From: zkauf...@nmr.mgh.harvard.edu
> To: gariko...@gmail.com
> CC: pablon...@hotmail.com; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Compatibility between RELEASE_I386 i386 and CentOS 6
>
> I have to agree with Gari, I see no
Hello,
I am finding that my bedposting is not completing successfully. I was able to
get my first two subjects to run successfully, however, for the other two
subjects that I have run I have gotten the following message:
For some reason the bedpostX process DOES NOT appear
to have successfully
Dear all,
I have run recon-all for some subjects,but this code is unexpected terminated
before it normally end. Can I run the code agian directly without deleting some
outputs obtained from recon-all? That is to say, part of recon-all outputs do
exist(as I have run recon-all previously), then re
13 matches
Mail list logo
