[Freesurfer] Research Assistant position

2013-04-23 Thread Olivier Coulon
Title: signatureMail2011 Dear All, please find below an announcement for a research assistant position. --- Neuroimaging Research Engineer - Centre IRMf de La Timone, Marseille, France

[Freesurfer] GLM | group comparison and correlation on surface with whole-brain DTI/tractography results | How to setup fsgd and contrast matrix?

2013-04-23 Thread Robert Schulz
Hi Freesurfers, I managed to project tractography results (seed-based whole-brain tractography performed in FSL) onto the surface of each individual subject (19 OLD, 19 YOUNG). Each individual surface (including the results) has been transferred to fsaverage to allow statistical group compari

[Freesurfer] transformation between cvs and native space

2013-04-23 Thread Kami Koldewyn
Hi All, We have contiguous ROIs in cvs template (volume) space. We need to move this to each individual subject's surface. What's the best way of doing this? We tried going from template volume to individual volume to individual surface, but these rois were not all contiguous on the surface

Re: [Freesurfer] merging dti data

2013-04-23 Thread Jon Wieser
Hi Doug we got good results with the dit of the merged brik's Jon - Original Message - From: "Douglas N Greve" To: "Jon Wieser" Cc: "freesurfer" Sent: Thursday, April 11, 2013 11:22:13 AM Subject: Re: [Freesurfer] merging dti data That might work. I think "motion" correction is going t

Re: [Freesurfer] merging dti data

2013-04-23 Thread Douglas N Greve
congrats! On 04/23/2013 02:13 PM, Jon Wieser wrote: > Hi Doug > we got good results with the dit of the merged brik's > Jon > > - Original Message - > From: "Douglas N Greve" > To: "Jon Wieser" > Cc: "freesurfer" > Sent: Thursday, April 11, 2013 11:22:13 AM > Subject: Re: [Freesurfer]

[Freesurfer] cwpvalthresh not specified

2013-04-23 Thread Jeni Chen
Hello, Just a quick question, if the 'cwpvalthresh' flag wasn't specified when running mri_glmfit-sim, the script will use the default .05 value, correct? Thanks for clairfying. Jeni Chen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.ed

Re: [Freesurfer] cwpvalthresh not specified

2013-04-23 Thread Douglas Greve
yes, correct On 4/23/13 11:05 PM, Jeni Chen wrote: Hello, Just a quick question, if the 'cwpvalthresh' flag wasn't specified when running mri_glmfit-sim, the script will use the default .05 value, correct? Thanks for clairfying. Jeni Chen

Re: [Freesurfer] cwpvalthresh not specified

2013-04-23 Thread Jeni Chen
Phew! Thanks! jeni ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e