Hello Freesurfer experts !
I created a new template with make_average_subject called 80tvs and I would
like to re-run some of my subjects with this new template. I can't find the
command line in FAQ. Is it for example : recon-all -all -s t0001 -target
80tvs ?? So I need the repertory of this ne
Hi Sophie
what template do you mean? You can't rerun the subcortical segs or
parcellations since they depend on manual labelings. You could regenerate
our cortical folding patterns atlas, but I don't think that buys you much
since the atlas you would build is by definition in register with our
You can also register your subjects to the new average subject (creates
a new spherical registragtion). Use the surfreg script (run with --help
for more info).
doug
On 2/15/13 8:55 AM, Bruce Fischl wrote:
Hi Sophie
what template do you mean? You can't rerun the subcortical segs or
parcella
Hi,
Could somebody say to me if exists some form by means of which I can
download the file "freesurfer-Linux-centos4-stable-pub-v5.1.0.tar.gz" in
several smaller parts?
Greetings,
Merlin Verdecia
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Este mensaje le ha llegado mediante el servicio de correo electronico que
ofrece Infomed para r
Hello FreeSurfer experts,
Has algorithm described in Winkler et al. (2012) Neuroimage paper for
computation of surface area been incorporated in v5.1, or is it part of
the 5.2b implementation?
Thanks for your help.
Shantanu
--
Shantanu Ghosh, Ph.D.
Harvard Medical School & Massachusetts Gener
mri_label2vol will take segmentations as an input look at the --help
doug
On 02/15/2013 04:25 PM, Roderick McColl wrote:
> Sorry for the bother, but there isn't a label for L or R WM.
> Should I use mri_vol2vol on the aseg.mgz file and the mni152.register.dat
> file instead i.e. just register as
