Re: [Freesurfer] bug repport mri_convert in freesurfer 5.1 segment fault on fedora 19

NIck The MRI_convert with debug information ran correctly aside from the leaks detected by valgrind. I manage to import sample-001,mgz into ernie using mri_convert with debuginfo. There is more updated info athttps://bugzilla.redhat.com/show_bug.cgi?id=905638. Knut On 30. jan. 2013 17:52,

[Freesurfer] cvs freesurfer cvs [checkout aborted]: cannot expand modules

Hi could you please add information about how to download from cvs? cvs -d :pserver:anonym...@fsvm.nmr.mgh.harvard.edu:/usr/fscvsroot checkout -P -r dev Give this error message cvs [checkout aborted]: must specify at least one module or directory Knut J _

[Freesurfer] Is the server down?

I was wondering if the sever was down? Im trying to download freesurfer its not working. Ive tried all the different downloads and still no response: http://surfer.nmr.mgh.harvard.edu/fswiki/Download I was trying to get the windows version: * ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.

Re: [Freesurfer] Is the server down?

Hi Francis I'll check, but not sure about the Sunday response time Bruce On Sun, 3 Feb 2013, Francis Manno wrote: > I was wondering if the sever was down? Im trying to download freesurfer its > not working. Ive tried all the different downloads and still no response: > http://surfer.nmr.mgh.

[Freesurfer] tracula bvecs error

Hi Anastasia, Any news? I checked my environment and it's ok. LANG="en_US.UTF-8"LC_COLLATE="en_US.UTF-8"LC_CTYPE="en_US.UTF-8"LC_MESSAGES="en_US.UTF-8"LC_MONETARY="en_US.UTF-8"LC_NUMERIC="en_US.UTF-8"LC_TIME="en_US.UTF-8" I have previously used the files that I send to you to perform FSL analysis

[Freesurfer] tracula bvecs error

I think that I have resolved the bvecs error by using sudo nano option but now in the next step I visualize this error: ERROR: fio_pushd: /Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/mniERROR: must specify brain mask volume for output subject Thanks, Stefano

Re: [Freesurfer] tracula bvecs error

Do you have a freesurfer recon of your subject's T1 in the $SUBJECTS_DIR? On Sun, 3 Feb 2013, std...@virgilio.it wrote: > I think that I have resolved the bvecs error by using sudo nano option but > now in the next step I visualize this error: > ERROR: fio_pushd: > /Applications/freesurfer/subje

[Freesurfer] R: Re: tracula bvecs error

Hi Anastasia, I have put T1 in /Applications/freesurfer/subjects/subject_prova/Diff01/ together data.nii.gz, bvals and bvecs.My $SUBJECTS_DIR=$FREESURFER_HOME/subjects/subject_provaT1 was called as T1_01.nii.gz. This is well done? Thanks, Stefano Messaggio originale Da: ayend...@nmr.mg

Re: [Freesurfer] R: Re: tracula bvecs error

No, putting your T1 in a folder is not the same as running freesurfer on it. You need to run recon-all on your T1. This is a piece of software that will segment your T1 (among other things). Tracula will need that segmentation to reconstruct your tracts. On Sun, 3 Feb 2013, std...@virgilio.i

[Freesurfer] DOSS and FDR in QDec

Hi FreeSurfers, These should be a simple questions but they have been bugging me. 1. I have two diagnostic groups that I want to compare controlling for gender and age. I am entering them in Qdec with diagnosis and gender as discrete factors and age as continuous (n=89). If I use DODS I get