Good morning,
I tried to run the following command:
recon-all -skullstrip -clean-bm -gcut -subjid S01
to remove the skull and remaining dura mater. However, for some subjects, I
get the following error:
** Gcutted brain is much smaller than the mask!
** Using the mask as the output instead!
Dear FS experts,I'm trying to perform the intrerhemispheric registration method on my centOS 4, I have downloaded all the files, but the mri_convert is saying that does not found the necessary libraries. I did download the mri_convert.linux, I have tried to re-download the file, but it apparentelly
Hi Doug,
Thanks for the information about how FS whitens the data. Is there a way
to temporally whiten data without running a GLM (i.e., without running
selxavg3-sess)?
Alex
On Tue, Jan 22, 2013 at 9:58 AM, Douglas N Greve
wrote:
>
> On 01/19/2013 03:18 PM, Alex Kell wrote:
> > Hi Freesurfe
Whoops, I just saw your response in your response. My bad -- please ignore.
Alex
On Fri, Jan 25, 2013 at 10:37 AM, Alex Kell wrote:
> Hi Doug,
>
> Thanks for the information about how FS whitens the data. Is there a way
> to temporally whiten data without running a GLM (i.e., without running
Dear Freesurfer,
When trying to start qdec I get the following error:
dyld: Library not loaded: /opt/X11/lib/libGLU.1.dylib
Referenced from: /Applications/freesurfer/bin/qdec.bin
Reason: image not found
Trace/BPT trap
Any suggestions for a work around?
Thanks,
Carl
--
<<•>>~<>~<<•>>~<>~<
Can you send the command line and terminal output?
On 01/25/2013 09:38 AM, Gabriel Gonzalez Escamilla wrote:
> Dear FS experts,
>
> I'm trying to perform the intrerhemispheric registration method on my
> centOS 4, I have downloaded all the files, but the mri_convert is
> saying that does not fo
Hi NewFei, canyou run the following commands and send me dng.log ?
cd /autofs/space/audrey_001/users/FSFASTFC
isxconcat0-sess -m pcc -o
matchedCTRLSCHIZ.rhDG.newest/noGMrhDGmc6/X/mni305.pcc.nii.gz -sf
matchedCTRLSCHIZ.txt -d /autofs/space/audrey_001/users/FSFASTFC -c X -a
noGMrhDGmc6 -split -int
Dear Free Surfer experts,
I am having problems with my FS installation. I am working with
Linux/Ubuntu version 11.10...I have followed the indications of the FS wiki
and it seems that it is installed but it does not work...it does not run in
the terminal and I do not know why and how can I do:
os
Hi Rosalia, try looking at the Beginner's Guide.
http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferBeginnersGuide
The main command for freesurfer is not actually "freesurfer", it's
recon-all.
doug
On 01/25/2013 01:31 PM, Rosalia Dacosta Aguayo wrote:
> Dear Free Surfer experts,
>
> I am havi
Dear Free Surfer experts,
Sorry for posting this again...but I have been trying this all the day and
nothing seems to change the situation.
I am having problems with my FS installation. I am working with
Linux/Ubuntu version 11.10...I have followed the indications of the FS wiki
and it seems that
Can you post the contents of your ~/.bash_profile
On 01/25/2013 01:41 PM, Rosalia Dacosta Aguayo wrote:
Dear Free Surfer experts,
Sorry for posting this again...but I have been trying this all the day
and nothing seems to change the situation.
I am having problems with my FS installation.
There's a bunch of stuff in the analysis folder (noGMrhDGmc6) including
some .mat files. FSFAST sees these .mat files and thinks they are
contrasts. So, you can remove all the extra stuff in that folder or you
can spec the contrast with -contrast.
doug
On 01/25/2013 11:49 AM, New Fei Ho wrote
There is not a file with this information; you have to create it. When
you run mri_glmfit, you supplied an input file (sometimes called y.mgh).
Assuming that this has the surface area in it, then then the y.mgh is
all the data for all the subjects in the fsaverage space. Using tksurfer
or freev
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