[Freesurfer] Brain Volume

Hi, I've been working with Freesurfer and FSL in order to compare the two softwares. However the last one has a tool called "Brain Extraction Tool" (BET) that provides all the brain volume including cerebellum. Is there any option in Freesurfer that makes the same as *BET*? Thank you for your att

Re: [Freesurfer] Brain Volume

Hi Ana the binary mri_watershed does skull stripping in FreeSurfer. cheers Bruce On Sun, 23 Sep 2012, Ana Arruda wrote: Hi, I've been working with Freesurfer and FSL in order to compare the two softwares. However the last one has a tool called "Brain Extraction Tool" (BET) that provides all

Re: [Freesurfer] Brain Volume

Thank you. But in the last message I forgot to say my final aim. After the skull stripping, how can I measure the volume? Ana Arruda ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Brain Volume

I've just seen the output from mri_watershed. And from the file aseg.stats, is there any measure that provide the brain volume? Thank you once again, Ana Arruda ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/

[Freesurfer] Qdec

Dear List I'm wondering about the proper way to set up an analysis that includes site as a regressor, and whether this is possible in qdec? My qdec.table.dat file looks like this. fsidgroup site 1 grp1 1 2 grp2 2 3 grp2 2 4 grp1 3 and so on