Please, observe the announcement of two new post doctoral positions in
NeuroImaging and behavior at the Karolinska Institute in Stockholm
- https://ki.netrecruiter.se/what:job/jobID:13820/where:4/
-https://ki.netrecruiter.se/what:job/jobID:13880/where:4/
Ivanka Savic MD, PhD
ivanka.savic-ber
Doug,
Sorry for so many questions, but can I run the autorecon3 command with my
previous recon-all -subjid (subject ID) -autorecon-pial or will the autorecon3
have to follow the previous command?
Thanks,
Cyrus
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:fr
You can run it from the same command line.
doug
On 8/22/12 8:45 AM, Sarosh, Cyrus wrote:
> Doug,
>
> Sorry for so many questions, but can I run the autorecon3 command with my
> previous recon-all -subjid (subject ID) -autorecon-pial or will the
> autorecon3 have to follow the previous command?
>
Hi Doug,
Thanks for the quickly reply. The new version of mri_segstats works fine. I
noticed after running it though that all the volumes are slightly different
than those reported by previous version. I think it might have something to do
with the partial volume correction, as the results are
yes, this is a fix that will be in the next release. The new results are
more accurate.
doug
On 08/22/2012 11:54 AM, Blazey, Tyler wrote:
> Hi Doug,
>
> Thanks for the quickly reply. The new version of mri_segstats works fine. I
> noticed after running it though that all the volumes are slightly
Hello - I'm having trouble using label2vol with the 17 network yeo annotation --
mri_label2vol --annot lh.Yeo2011_17Networks_N1000.SAD_P05.annot --o
outfile.nii.gz --hemi lh --subject SAD_P05 --temp
/mindhive/xnat/surfaces/sad/SAD_P05/mri/orig.mgz --identity
The annotation was created by mri_su
Hi Anisha, I did make a fix to this program a few months ago. Can you
try the new version? I put it here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_label2vol
doug
On 08/22/2012 01:38 PM, Anisha Keshavan wrote:
> Hello - I'm having trouble using label2vol with the 17 netwo
Hi Alex, there's no way to "erase" it in a way that you can recover the
underlying signal. I'm surprised that such small things are causing the
talairach to crash. If the writing is always the same value and that
value does not appear in other parts of the image, you might be able
to replace
Hi Doug,
Thanks for the quick reply! It seems the value of the writing is much
higher than any value elsewhere in the image (over 4000). Instructions on
how to replace this value with values of nearby voxels would be great --
hopefully that will allow us to run the autorecon1 command on it.
Than
I'm just shooting from the hip here, but here is what I would do:
1. Create a mask of writing
mri_binarize --i 001.mgz --min 4000 --o mask.mgz
mri_binarize --i 001.mgz --min 4000 --inv --o mask.inv.mgz
2. Mask out the writing
mri_mask 001.mgz mask.inv.mgz 001.masked.mgz
3. Scale t
Hi Doug,
Many thanks for your help.
Can you please take a look and see if this is the correct way to do it. I want
to overal in fact my QDEC clusters on the connectivity maps in FSL but I got
them by registering on the MNI 152 so I suppose I can just transform or move my
QDEC clusters on the
Hi,I’m a Freesurfer novice, and am confused about how to run a 3rd level cross-subject analysis on the surface using as input cross-run .gfeats from 10 subjects generated from a 2nd level analysis of fMRI data in FSL.Following the directions posted at http://surfer.nmr.mgh.harvard.edu/fswiki/FsTu
12 matches
Mail list logo
