Sorry. I meant row 1 should be vertex 0, row 2 should be vertex 1, etc...
--Thomas
On Wed, Mar 14, 2012 at 3:59 PM, Ji hoon Oh wrote:
> Thank you for your response.
> Although I followed your instructions, in my system, it seems that two
> coordinates are not the same.
>
> When I read sphe
Research
position (PhD)
in translational developmental neuroscience (with a focus on eating
disorders) at
the Department
of Child and Adolescent Psychiatry, University Hospital Carl Gustav
Carus,
Dresden University of Technology, Germany
PLEASE
REPOST F
Dear Thomas,
Thanks for your help! It works out well.
Jihoon Oh
On Wed, Mar 14, 2012 at 5:32 PM, Thomas Yeo wrote:
> Sorry. I meant row 1 should be vertex 0, row 2 should be vertex 1, etc...
>
> --Thomas
>
> On Wed, Mar 14, 2012 at 3:59 PM, Ji hoon Oh wrote:
> > Thank you for your resp
Hello there,
I''ve tried a couple installations of FreeSurfer as listed on the website.
Though there seems to be a problem. Both linux tarballs seem to be designed for
centos4, though that version is not supported anymore, so downloading is a
pain, and accessing packages is out of the question.
Dear all,
we have performed a cluster analysis in Qdec and found a significant
vertex-cluster after correction for multiple testing using the Monte
Carlo simulation. Our aim is to map the vertices to an atlas which is
different from that of Desikan. To do that we need the volume-based
information
Hi Florian, have you read the help? You can get it by running the
command with --help. If you still have questions, let me know.
doug
Florsek wrote:
> Dear all,
>
> we have performed a cluster analysis in Qdec and found a significant
> vertex-cluster after correction for multiple testing using th
Dear freesurfers,
how can I compute the intersection between binarized masks?
Thank you for your support,
Miranka
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The information i
Use mri_binarize with an input and a mask. If you want the number of
voxels in the intersection, then use the --count option.
doug
Miranka Wirth wrote:
> Dear freesurfers,
>
> how can I compute the intersection between binarized masks?
>
> Thank you for your support,
> Miranka
>
> ---
Fatima,
You might have an older bundle of the data. I've confirmed that the
current tarball contains the aseg.stats file that you noticed is
missing. It was missing at one point several months ago.
You dont need to download the tarball again if you dont want to.
Instead, you can recreate the st
Dear Freesurfer experts,
How can I transfer the coordinate in individual space into MNI space. I
don't want to transfer the whole volume, I only need to transfer the
coordinate of some points.
Thanks,
--
Tianyi Qian
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Dear Dr. Yendiki and TRACULA experts,
I was wondering what the unit of posterior distributions of reconstructed
paths? By looking at the intensities, it ranges from 0 to ~150. I thought
this is supposed to be a probability, but it's not? If it's in arbitrary
unit, should I z-score them in order to
If you have the col row and slice of a voxel, then
mni305xyz = X*S*crs
where crs = [col row slice 1]'
X = matrix from subject/mri/transforms/talairach.xfm
S = matrix from "mri_info --vox2ras orig.mgz"
Note that these coordinates are for MNI305 space.
doug
Tianyi Qian wrote:
> Dear Freesurfer exper
Dear Freesurfer Experts,
thanks for helping me! I run the following comand line:
mri_surfcluster --in qdec/lh-Avg-thickness-XXX_TOTAL-Cor/sig.mgh --no-adjust
--subject fsaverage --hemi lh --thmin 2 --minarea 100 --sum TestClusters
After a while, I got this answer:
thsign = abs, id = 0
v
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