Re: [Freesurfer] Coordinates of output files

Hi Octavian the coordinate systems used by FreeSurfer are documented here: https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems?highlight=%28systems%29%7C%28coordinate%29 I believe that the ?h.dpial.ribbon.mgz is one our "conformed" coordinate system, but Doug would know best. cheers

[Freesurfer] Freeview NIH Color Map

Hi, Is there any way to prevent the NIH color map in Freeview from displaying values higher than the max as black? I can only seem to find this option for the Heat color map. Thanks for any help, -Tyler The material in this message is private and may contain

[Freesurfer] Output volume along with its calculated pia

Dear All, I am increasingly fascinated by freesurfer. Here is a rookie issue: I use a source imaging program that is rather simple-minded in its MRI processing steps. To be able to use the inverse solution tools of that program, I need to use 2 volumes: - a head MRI to be used to electrode coregis

[Freesurfer] Help! What does the error mean

Dear All I was just process the commands: recon-all -i /home/wb/test_data/ZWK/34810194 \ -s ZWK \ -sd /home/wb/test/ \ -all And then Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! I just want to know what does the error m

Re: [Freesurfer] Freeview NIH Color Map

Unfortunately no. I'll update it in the next release. Ruopeng On 3/4/12 9:11 PM, Blazey, Tyler wrote: > Hi, > > Is there any way to prevent the NIH color map in Freeview from displaying > values higher than the max as black? I can only seem to find this option for > the Heat color map. > > Than