Dear Freesurfer Community!
Recently I started working with Freesurfer and had a number of
subjects processed through the pipeline (recon-all -autorecon-all
-subjid subjname) without error.
So far I am mainly interested in the outcome of the segmentation
of s
Dear FS experts
We have the following request from one reviewer:
"Provide more detail and more discussion on why the thickness maps produced
by FreeSurfer are not limited to the voxel resolution of the image. This is
not obvious to everybody who is not an expert in cortical thickness
measurements
Hi Guys,
So I have Freesurfer running quite well on Ubuntu (thank you to
all who helped me on this one). I am going through the testing phase (as
described here https://surfer.nmr.mgh.harvard.edu/fswiki/TestingFreeSurfer )
and when I try to run the command 'qdec', I get the foll
Never mind. Found my problem:)
Brian.
(705) 474-8600 x2611
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of James, Brian
Sent: January-05-12 9:36 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Qdec Issue
Hi Guys,
HI Experts:
Using Qdec, I have tried to generate Stats Data Tables, but below is the error
message I received. .I get this error message for all subjects but the
aseg.stats files are there and seem ok...
any ideas of what I am doing wrong?
cheers,
catherine
asegstats2table --common-segs --mea
Hello Experts:
Is is possible to run 3D SPGR's with contrast (gadolineum) through freesurfer?
Also, in a separate dataset, we have 3D SPGR's that have unfortunately been
compressed. Can they still be run?
Thanks,
catherine___
Freesurfer mailing list
F
Hi Experts:
Sorry, I forgot to attach the following error message I get when I attempt to
generate stats data tables:
I would be grateful if you tell me what I am doing wrong,
catherine
asegstats2table --common-segs --meas volume --tablefile
/5000_series/5000_series/qdec/stats_tables/aseg.volu
