[Freesurfer] Convert non-surface labels to volume masks

2011-11-29 Thread konglq
Dear Freesurfers, I am trying to convert a non-surface label into a binary volume mask (does that make sense?). To create the label I used tkmedit (brush tool) to select the voxels I need on the appropriate slices and saved as a label file. Then I tried to use mri_label2vol to convert this label

[Freesurfer] How to display the dtrecon results

2011-11-29 Thread Antonella Kis
Dear Lilla, Sorry I am bother you one more time with a question: I was trying to display the dtrecon result smore exactly the GLM group analysis results. After I did the mri_concat */fa-tal.nii --o group-fa-tal.nii I  created a mask: mri_concat */mask-tal.nii --o group-masksum-tal.nii --mean

[Freesurfer] TAL-to-avg35

2011-11-29 Thread Antonella Kis
Dear experts, I would appreciate if you can provide me with the TAL-to-avg35 template. Thank you very much! ANtonella ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The inform

[Freesurfer] Students for position (fwd)

2011-11-29 Thread Bruce Fischl
FYI -- Forwarded message -- Date: Tue, 29 Nov 2011 14:26:21 -0500 From: Thomas Talavage To: "Sutton, Brad" , Bruce Fischl , Noam Harel , dn...@umich.edu, Peter A. Bandettini , x...@emory.edu, Steve Wright Subject: Students for position Hey folks --- If you could