Today it was released the version 4.0.0 of iSurf Brainview, it's a
majorversion release for IPad, IPhone and IPod Touch. It's also a
landmark
release.
Major New Features
- 3D Visualization of Cortical structure
- 3D Model is fully "touchable" and displays the name of touched structure
using aparc.
I just took a look at it, and I think it's still running. How long has it
been? There looks like there is a very large topological defect, that will
take a long time to correct. The correction has complexity that is
quadratic in the convex hull of the largest defect, so large ones can take
a *l
Michelle Umali wrote:
> Hi Doug,
> Thank you for your help with this. So when I looked at the maps, two
> issues arose.
>
> 1) The fieldsign map looks like it needs lots of smoothing. When I
> ran the individual subjects on the surface, I smoothed by 20 during
> fieldsign-sess. Is it still
Dear Experts,
I ran the wm.mgz corrections and pial corrections using the command:
-autorecon2 –autorecon3 –subjid sub2
However, Freesurfer exited the program with the following message:
SUBJECTS_DIR/Users/subdir
FREESURFER_HOME Applications/freesurfer
Loading source label.
No such file or
Does /Users/subdir/ fsaverage exist? Also, it looks like there could be
a space between "subdir/" and "fsaverage"
doug
Vy Dinh wrote:
> Dear Experts,
>
> I ran the wm.mgz corrections and pial corrections using the command:
>
> -autorecon2 –autorecon3 –subjid sub2
>
> However, Freesurfer exite
Hi Douglas,
Thank you for your reply. The subdir is just an example, so that is probably a
typo in the original post. Fsaverage/ did not exist in SUBJECTS_DIR when we ran
the recon commands, so in response to the error, I copied fsaverage/ from the
freesurfer directory to my SUBJECTS_DIR. I gue
It does need to be there, but usually it creates it's own symbolic link
(so you should not need to copy it).
doug
Vy Dinh wrote:
> Hi Douglas,
>
> Thank you for your reply. The subdir is just an example, so that is probably
> a typo in the original post. Fsaverage/ did not exist in SUBJECTS_DIR
Then does it mean that I can ignore this error message?
Vy T.U. Dinh
Research Assistant, Neurological Sciences
Rush University Medical Center
Phone: (312) 563-3853
Fax: (312) 563-4660
Email: vy_d...@rush.edu
From: Douglas N Greve [gr...@nmr.mgh.harvard.edu
No, it means that it cannot find that file.
doug
Vy Dinh wrote:
> Then does it mean that I can ignore this error message?
>
> Vy T.U. Dinh
> Research Assistant, Neurological Sciences
> Rush University Medical Center
> Phone: (312) 563-3853
> Fax: (312) 563-4660
> Email: vy_d...@rush.edu
>
> __
Hi all,
I am trying to find the volumes of lesions present in the white matter.
Would 'WM-hypointensities' in aseg.stats give me this value? (A similar
label is also found in wmparc.stats, but the values are not the same)
Also, does the tot-cerebral-white-matter volume include the
WM-hypointensit
Yes, use the WM-hypointensities value from aseg.stats (differences with
wmparc.stats are due to differences in partial volume correction).
tot-cerebral-white-matter includes the hypointensities
doug
Sindhuja Tirumalai Govindarajan wrote:
> Hi all,
>
> I am trying to find the volumes of lesions
You're absolutely right. The lh.BA1.label file is missing within
freesurfer/fsaverage. I thought that we may have had the same issue as this
poster
(http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg19399.html)
since we use a mount, but it seems that the missing BA labels is the rea
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