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Hi Antonella, there is not an option for getting the number of vertices
because that is not a meaningful quantity. Why do you want it?
doug
Antonella Kis wrote:
>
> Hi Bruce,
>
> Sorry to bother you again with the same question. Unfortunately I did
> not get any reply from the freesurfer list (f
It looks like that file is there now. Is the problem fixed?
doug
Chindhuri Selvadurai wrote:
> Hi all,
>
> When I run isxconcat-sess, I am experiencing an error finding a 'dof' file
> in my analysis directories within the FSD files.
>
> subjects directory: /cluster/manoach/milton/subjects
>
> comm
Hi Aga, what you have done is correct, no need to include the pvr in the
fsgd.
doug
Burzynska, Aga wrote:
> Dear all,
> I am trying to make group level analysis of functional data on the surface
> and add per-vertex regressors (PVR, here: cortical thickness) into the
> design. When I view the r
What version of FS are you running and on what platform? Can you upload
the file to me at our file drop below?
doug
Tax, C.M.W. wrote:
> Dear Sir/Madam,
>
> I would like to use freesurfer for cortical flattening, working with the nii
> format. When I try to load the nii.gz file as described on
Great news, thank you, Doug!
Best,
aga
On 8/3/11 5:02 PM, "Douglas N Greve" wrote:
>Hi Aga, what you have done is correct, no need to include the pvr in the
>fsgd.
>doug
>
>Burzynska, Aga wrote:
>> Dear all,
>> I am trying to make group level analysis of functional data on the
>>surface and add
Hi Shanqing, this is a known problem. One way around it is to convert
the label to an annotation (mris_label2annot), then run mri_aparc2aseg
(converts surface info into a volume), then mri_cor2label to extract the
final label. It's not elegant, but it works.
doug
Shanqing Cai wrote:
> Hi,
>
>
Hi Ammar - It looks like it's the same text file formatting issue that
someone else had recently. Did you create this file in excel by any
chance? It can't be read properly under unix.
a.y
On Wed, 3 Aug 2011, Moiyadi, Ammar wrote:
> Hi - The txt files are missing for all the tracts as it turn
Dear friends,
I'd like to mesure the midbrain volume from some patients using Freesurfer.
Is it possible or I can only mesure the brain stain volume?
Thnak you.
Lucas Lessa.___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mg
Hi - I created the text file with gedit in Lucid Ubuntu. I checked my locale
and my lang reads en_US.UTF-8, is this the same for you?
Thank you,
Ammar Moiyadi, BS
Professional Research Assistant
Department of Psychiatry
University of Colorado Anschutz Medical Campus
303-724-5490
___
Yes, that's the lang that I got, too. But the text file shows up with ^M's
where the ends of lines should be on darwin and on centos only the first 2
lines show up.
On Wed, 3 Aug 2011, Moiyadi, Ammar wrote:
> Hi - I created the text file with gedit in Lucid Ubuntu. I checked my locale
> and
Hi Lucas,
sorry, we just label brain stem as one segment.
cheers
Bruce
On Wed, 3 Aug 2011, Lucas
Lessa wrote:
Dear friends,
I'd like to mesure the midbrain volume from some patients using Freesurfer.
Is it possible or I can only mesure the brain stain volume?
Thnak you.
Lucas Lessa.
___
Hi Freesurfers:
I am trying to minimize the amount of skull stripping manual edits I need to
make on Freesurfer outputs due to remaining dura. I've been trying both:
adjusting the watershed parameters and using gcut.
However, I noticed the output with and without gcut for the same participant
Hello,
I'm looking for a way to extract data from hippocampus labels. I was wondering
if there is a simple command that I can use to get the data from the labels
between certain slices. If there's not, then I was wondering what the best
course of action would be to do so. I need to be able to
Hello,
I'm looking for a way to extract data from hippocampus labels. I was wondering
if there is a simple command that I can use to get the data from the labels
between certain slices. If there's not, then I was wondering what the best
course of action would be to do so. I need to be able to
Hello,
I'm looking for a way to extract data from hippocampus labels. I was wondering
if there is a simple command that I can use to get the data from the labels
between certain slices. If there's not, then I was wondering what the best
course of action would be to do so. I need to be able to
Hello,
I'm looking for a way to extract data from hippocampus labels. I was wondering
if there is a simple command that I can use to get the data from the labels
between certain slices. If there's not, then I was wondering what the best
course of action would be to do so. I need to be able to
Hi Sunil,
when you say "get the data", what do you mean? What data do you want?
Functional? Anatomical intensity?
Bruce
On Wed, 3 Aug 2011, Sunil Patel wrote:
> Hello,
>
> I'm looking for a way to extract data from hippocampus labels. I was
> wondering if there is a simple command that I can u
Hi Antonella,
it's hard to say just looking at a single slice. Why do you think you
need to correct it?
Bruce
On Wed, 3 Aug 2011, Antonella Kis wrote:
Hi Bruce,
I will be very grateful if you or someone else can give me an advise if I
should do some corrections for the optic nerve in the f
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