Hi freesurfer 's
Can anyone help me how to create a ROI mask. I have read the Cortical
Thickness of a Volume-defined ROI tutorial but it doesn't specify
how to generate that ROI.nii file. How many points are needed? What brain
image must be used as a reference?
Any help will be greatly appreciated
Hi Antonella,
those regions should be compiled in the stats/aparc.annot.ctab file that
should be easy to import into excel or other packages for analsys and
plotting.
cheers
Bruce
On Mon, 4 Jul 2011, Antonella Kis wrote:
Good morning Bruce,
I posted my message also to the list and I w
Hi Leo
are you trying to create a surface-based ROI or a volume one? What do you
want to do with it after it exists?
cheers
Bruce
On Mon, 4
Jul 2011, leonardo kay wrote:
> Hi freesurfer 's
> Can anyone help me how to create a ROI mask. I have read the Cortical
> Thickness of a Volume-defined R
Dear Freesurfers,
My goal is to evaluate the cortical thinning patterns in some
(cortical
aparc) regions, and to relate that to loss of PET activation in the
same
regions. I would like to clarify the steps of the pipeline in
Freesurfer
(v5.0.0) for this purpose.
>From my reading of previous
Thank you very much Bruce!
The only files that I have in stats directory after running recon-all and
qcache -al are the following:
lh.aparc.a2009s.stats lh.entorhinal_exvivo.stats rh.curv.stats
lh.aparc.stats rh.aparc.a2009s.stats rh.entorhinal_exvivo.stats
lh.BA.stats
Yes
On Jul 4, 2011, at 2:12 PM, Antonella Kis wrote:
>
>
> Thank you very much Bruce!
>
> The only files that I have in stats directory after running recon-all and
> qcache -al are the following:
>
>
> lh.aparc.a2009s.stats lh.entorhinal_exvivo.stats rh.curv.stats
> lh.aparc.stats
Hi,
I understand that the models for the hippocampal subfield segmentation were
created using high resolution MRI scans. But it sounds like this procedure can
be used for scans with 1mm ^3 resolution, right? The resulting values would
just need to be divided by 8 in order to get the subfield
