[Freesurfer] make_average_subject error in T1.mgz and t1.mgz

Dear FS experts,
I use FS5.1 and previous data run on other machine. When I try to make_average_subjects program, I get error message that it can not get T1.mgz data from subject folder. When I check my dataset, actually it has t1.mgz rather than T1.mgz. how could I change the setting fr

[Freesurfer] mri_cvs_register version for CentOS4 and CentOS5

Dear FS experts

I download CentOS5 x86-64 version (not CentOS4) of FS 5.1. should I need to upgrade the mri_cvs_register and applyMorph for correction ?

best

JLH

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Re: [Freesurfer] make_average_subject error in T1.mgz and t1.mgz

what type of operating system are you using? On Sat, 11 Jun 2011 t...@ms36.hinet.net wrote: >

Dear FS experts,
I use FS5.1 and previous data run on > other machine. When I try to make_average_subjects program, I get error > message that it can not get T1.mgz data from subject folder. Wh

[Freesurfer] A question about the coords of the vertex

Hi all, I have a question about the coords of vertex in ?h.white file. I load the ?h.white file in Matlab and get a variable called vertex_coords, and I'm wondering what kind of coords they are, MNI or something else? Also how can I get the MNI coords of the vertex? Thank in advance, Best Regard

[Freesurfer] qustions about contents of label file

Hello: I use qdec to generate statistical significant areas and draw ROI and map the ROI to each subject ,finally i get a label file of each subject called lh.supriorfrontal.label which can be seen in attachment below.But i'm a little confused with content of the label file, Is it correct