Dear Freesurfer experts,
1) How many simultaneous processing can be done on a cluster ? I did 20
analysis at the same time, and it worked. They all finished without error.
(didn't find this question on the list)
2) In order to adapt the previous subject analysing to the new FS-5.1, must
I use the
Thank you again Doug,
I've tryed all the possibilities you said, but still not have a nii image, It
says that it's reshaping to 6, but also when I change to another factor number
it always says reshaping to 6, and the resultant nii image has still 163842
vertex so no program is able to read it
Hi Doug,
The bbregister didn't work out well, it didn't register properly but I
must be putting in some erroneous argument:
bbregister --s SUBJ1 --mov TP.nii.gz --reg register.dat --init-fsl --t1
The final check with tkregister shows the temporal pole mask several
slices off bilaterally and
Hi all,
I have an nmr center account and tried to checkout the FREESURFER source code. I
logged in to door.nmr.mgh.harvard.edu via x-win, and then copied the following
commands
setenv CVSROOT /autofs/space/repo_001/dev
cvs checkout -P dev
but the following error appeared. I was wondering how sho
access to that repository is limited to freesurfer developers. but
there is a read-only version of the repository publicly accessible by
these instructions:
https://surfer.nmr.mgh.harvard.edu/fswiki/ReadOnlyCVS
n.
On Mon, 2011-05-30 at 11:57 -0400, Trina Kok wrote:
> Hi all,
>
> I have an nmr
Hi Alex
1) depends on how many CPUs you have and how much memory is on them. We
have run hundreds of recons at the same time on our cluster.
2) This depends on whether you want to keep your old edits or not.
cheers
Bruce
On Mon, 30 May
2011, Alexandru Hanganu wrote:
> Dear Freesurfer expert
Hi Kareem,
can you explain a bit more about where these atlas-derived labeling comes
from? Is it in MNI space? Is there any reason to think it will register
well to this subject? Or is it in this individual's space? If the latter,
you probably want to give -t2 to bbregister since in your case a
what is the resolution of the CSI image? Was it and the mprage acquired
in the same session?
On Sun, 29 May 2011, Trina Kok wrote:
> Hi,
>
> I actually have a MPRAGE and a chemical shift imaging data (both shifted and
> rotated from isocenter) and I would like to register the mprage according to
Yup they are acquired in the same session, so it's just the rotation and
isocenter that's different. The CSI image has a different resolution
ard 0.8cc.
Quoting Bruce Fischl :
> what is the resolution of the CSI image? Was it and the mprage
> acquired in the same session?
> On Sun, 29 May 2011,
Hi Bruce,
Thank you for your reply. The labels are coming from me exporting the
temporal pole label for a subject from fslview -- so that would mean
it's in standard space? All I would need is that 4x4 affine matrix in
order to calculate transformations but I'm not sure how to calculate
th
then you should be able to use -regheader in tkregister2 to get close (or
use -initheader in bbregister)
On Mon, 30 May 2011, Trina Kok wrote:
> Yup they are acquired in the same session, so it's just the rotation and
> isocenter that's different. The CSI image has a different resolution ard
>
Dear list:
I am analyzing functional data using FSFAST. I have 7 conditions in a
blocked design and I would like to run an F-test using the following
contrast matrix:
[ -0.5000 00.5000 0 -0.50000.5000 0;
0 -1. 01. 0
12 matches
Mail list logo
