Dear Chris, Doug,
We created a ROI in qdec (EXMPL.label) and tried to measure it's thickness.
The cmd used:
aparcstats2table --hemi ?h --subjects 1 2 3 --parc .../DIR/EXMPL.label --meas
thickness --t ROI.txt
ERROR: cannot find
.../freesurfer/subjects/SUBJECT_NAME/stat/EXMPL.label.statsqdec/DIR
Use mris_anatomical_stats. aparcstats2table is used for combining
several outputs of mris_anatomical_stats.
Alex Hanganu wrote:
> Dear Chris, Doug,
>
> We created a ROI in qdec (EXMPL.label) and tried to measure it's
> thickness.
>
> The cmd used:
> aparcstats2table --hemi ?h --subjects 1 2 3 --
Does it look like that when you load the original analyze into tkmedit?
andrewkra...@ucla.edu wrote:
> Sure. Here's a screenshot of the orig.mgz.
>
> Quoting Bruce Fischl :
>
>> Can you send us an image? The 16 bit shouldn't be a problem
>> Bruce
>>
>>
>>
>> On Feb 23, 2011, at 7:28 PM, andrewkra.
I actually didn't know you could load analyze into tkmedit, but now
that I have, it does look like that too (just without the direction
arrows). It doesn't look like that when I look at it in other viewing
programs, though (it looks like you'd expect).
-- Andrew
Quoting Douglas N Greve :
>
You have /stat/ rather than /stats/ in the address. Have you checked that?
>>> Alex Hanganu 2/24/2011 12:22 PM >>>
Dear Chris, Doug,
We created a ROI in qdec (EXMPL.label) and tried to measure it's thickness.
The cmd used:
aparcstats2table --hemi ?h --subjects 1 2 3 --parc .../DIR/EXMPL.label
Can you send us the analyze files?
On Feb 24, 2011, at 12:37 PM, andrewkra...@ucla.edu wrote:
> I actually didn't know you could load analyze into tkmedit, but now that I
> have, it does look like that too (just without the direction arrows). It
> doesn't look like that when I look at it in o
Sure. Since it's probably a bit big for email, I uploaded it to
http://dl.dropbox.com/u/432093/ANALYZE.zip
-- Andrew
Quoting Bruce Fischl :
> Can you send us the analyze files?
>
>
>
> On Feb 24, 2011, at 12:37 PM, andrewkra...@ucla.edu wrote:
>
>> I actually didn't know you could load analyze
Hi all,
I've been consistently getting a couple of different errors early on
during -autorecon1:
.ncvarput: ncid 4: Bad file descriptor
mivarput1: MINC package entry point
sharpen_volume: crashed while running minclookup (termination
status=768)
nu_estimate_np_and_em: crashed while runni
It looks the same to me in fslview. I'm guessing that there is a
byte-swapping problem. Any chance the .img file was created under linux
and the .hdr created under windows (or vice versa)?
andrewkra...@ucla.edu wrote:
> Sure. Since it's probably a bit big for email, I uploaded it to
> http://dl
There's actually quite a large chance for that, as we convert the
DICOMs to ANALYZE on iMacs; skull-strip mostly on PCs; register and do
other processing on remote machines running OpenBSD, IRIX, and Linux
(some of which are little-endian and some of which are big-endian);
and then check ev
not an easy way. You'd have to find out what the byte swapping is in
each file (or verify that the byteswapping is different). The other
programs may check that the voxel values are "reasonable" and byteswap
them if they are not.
andrewkra...@ucla.edu wrote:
> There's actually quite a large cha
Dear freesurfer experts,
I have what I think is a fairly straighforward task, but the steps are not
exactly clear to me. I wish to create a new label on the cortical surface
and then map this label to each individual subject in order to extract roi
data. I've successfully made my label on the co
Hi John,
you can use mri_label2label for this.
cheers
Bruce
On Thu, 24 Feb 2011, John Richey
wrote:
> Dear freesurfer experts,
>
> I have what I think is a fairly straighforward task, but the steps are not
> exactly clear to me. I wish to create a new label on the cortical surface
> and then m
I've played around with byteswaping, but alas it doesn't seem to be
the issue. The original ANALYZE file is 16-bit little endian (or at
least says it is), but when I swap just the .img to big endian and use
the original header, or give the original .img a 16-bit big-endian
header, the resul
Hello, Nick
I tried mri_convert work, glxgears,tksurfer, qdec,freeview. It all respond as
"Command not found"
two questions:
1) How should I initiate freesufter evey time i turn on the computer?
2) The other day when I installed freesurfer,i typed “tkmedit bert orig.mgz”,
it reponded “Illeg
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