Re: [Freesurfer] Interpreting results from Qdec

2010-12-30 Thread Nick Schmansky
ans. 1. - the easiest way is to Ctrl- left mouse click on a blob, and a plot of the data at that surface vertex will appear. the group will be apparent from that (say, demented group is thinner than non-demented group). this data is significance data (log p, so '2' is 0.01), so mean and stdev wou

Re: [Freesurfer] Covariates in Qdec

2010-12-30 Thread Nick Schmansky
age and iq can be entered as nuisance variables, where 'nuisance' means 'controlling for'. n. On Wed, 2010-12-29 at 13:14 -0500, Gallen, Courtney (NIH/NIDA) [F] wrote: > Hi, > > > > I’m running an analysis in Qdec in which I’d like to control for 3 > variables (1 discrete (sex), 2 continuous

Re: [Freesurfer] Using aseg to sample other image types

2010-12-30 Thread Nick Schmansky
mri_segstats, for example: mri_segstats --seg aseg.mgz \ --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt \ --i T1.mgz \ --sum T1.stats produces a text file 'T1.stats' which has stats on each aseg struct as taken from the vol T1.mgz. n. On Thu, 2010-12-30 at 17:52 -0500, Carl Anderson wrote: >