[Freesurfer] Cortical Classifier for PALS

2010-12-18 Thread Lena Palaniyappan
I want to use the annot file for lobar areas in fsaverage to be mapped onto all of my subjects. As I don't want to disassemble the annot to single labels but generate lobar.annot for all subjects, I intend to use mris_ca_label -l fsaverage/label/lh.PALS_B12_Lobes.annot lh lh.sphere.reg subj

Re: [Freesurfer] Cortical Classifier for PALS

2010-12-18 Thread Lena Palaniyappan
Is it legit to create a .gcs file using fsaverage as the sole subject for the PALS parcellations? I intend to use this .gcs to mri_ca_label all my subjects. Please advise, Lena On 18/12/2010 13:57, "Lena Palaniyappan" wrote: I want to use the annot file for lobar areas in fsaverage to be

Re: [Freesurfer] Cortical Classifier for PALS

2010-12-18 Thread Bruce Fischl
Hi Lena, I'm not sure there's much point. You might be better off just using mri_label2label to propagate the PALS labels to other subjects. cheers Bruce On Sat, 18 Dec 2010, Lena Palaniyappan wrote: > > Is it legit to create a .gcs file using fsaverage as the sole subject for the > PALS parc

Re: [Freesurfer] Cortical Classifier for PALS

2010-12-18 Thread Lena Palaniyappan
Thanks Bruce But surely there must be some way to get the stats for all Brodmann parcellations without having to label each region individually... Any ideas? Cheers Lena On 18/12/2010 19:02, "Bruce Fischl" wrote: Hi Lena, I'm not sure there's much point. You might be better off just using m

Re: [Freesurfer] Cortical Classifier for PALS

2010-12-18 Thread Bruce Fischl
hmmm, I thought label2label supported annots, but I can't find it in the help. Doug will be able to comment on this when connectivity allows. Bruuce On Sat, 18 Dec 2010, Lena Palaniyappan wrote: > Thanks Bruce > > But surely there must be some way to get the stats for all Brodmann > parcellati