Re: [Freesurfer] Errors for talairach transformation

2010-11-18 Thread Bruce Fischl
Hi Liang, you need to use the monkey analysis stream as many of the steps simply don't apply to nonhuman data (such as the automated Talairach alignment!) cheers Bruce On Wed, 17 Nov 2010, liang wang wrote: > Hi Bruce, > > I had tried to run recon-all on the dicoms. But the same errors show up

[Freesurfer] Qdec errors: Mapping Label to Subjects

2010-11-18 Thread Jessie Chen
Hi Everyone, I am trying to extract volume and thickness data from a list of subjects for several ROIs that Freesurfer does not automatically define (ie. Broca's area). My plan was to load a .dat table into Qdec with a column of subject IDs and a column with a dummy continuous variable. Then I wou

Re: [Freesurfer] freeview load overlay error...

2010-11-18 Thread Gonzalo Rojas Costa
Dear Dr. Wang: I got the message: "mris_info zstat3_rh.w nquads=8321536, nvertices=2 ERROR: MRISread: file 'zstat3_rh.w' has many more faces than vertices! Probably trying to use a scalar data file as a surface! No such file or directory" Sincerely, Gonzalo Rojas Costa Laboratory for A

Re: [Freesurfer] Qdec errors: Mapping Label to Subjects

2010-11-18 Thread Nick Schmansky
can you try a newer version of freesurfer? i think these were fixed since v4.0.2. n. On Thu, 2010-11-18 at 10:56 -0800, Jessie Chen wrote: > Hi Everyone, > > I am trying to extract volume and thickness data from a list of > subjects for several ROIs that Freesurfer does not automatically > def