Hi, all,
I have some questions about performing the FDR correction in Qdec.
I ran recon-all on all my subjects, then ran the surface group analysis
following the Qdec tutorial. There are 3 factors in the qdec.table.dat file:
age, gender and diagnosis. In the Design tab of Qdec, I selected the
dis
Hi:
How can I display an overlay in such a manner that only values between "min"
and "max" are displayed in a color palette, and values less than "min" and
values greater than "max" are displayed in gray ?...
Sincerely,
Gonzalo Rojas Costa
___
F
When you say "in gray" do you mean transparent (so you can see the gray
scale curvature pattern) or do you mean you want the activation to be
opaque and gray instead of colored?
Gonzalo Rojas Costa wrote:
> Hi:
>
> How can I display an overlay in such a manner that only values between "min"
>
That is strange. Can you change the FDR to something ridiculous like .5
and see if that changes things?
Xiaojing Long wrote:
> Hi, all,
>
> I have some questions about performing the FDR correction in Qdec.
>
> I ran recon-all on all my subjects, then ran the surface group
> analysis followi
Hi:
I mean transparent...
Sincerely,
Gonzalo Rojas Costa
Laboratory for Advanced Medical Image Processing
Department of Radiology
Las Condes Clinic
Lo Fontecilla 441, Las Condes, Santiago, Chile.
Tel: 56-2-2105170
Cel: 56-9-97771785
www.clc.cl
El 09-07-2010 14:25, Douglas N Greve escribi
There is no way to set that up in tksurfer (everything above max is
going to be yellow or cyan). But you can threshold the input map such
that values above max are set to 0, then they will show up transparent.
Use mri_binarize to create a mask with voxels between min and max set to
1. Then use
Hello, Freesurfers
After autorecon3, there are cortical measures for the over 30 predefined
regions. And for each regions, there are area, volume, and thickness 3
different measures, which means there are approximately 200 measure for both
hemispheres.
As a preliminary analysis without spe
Many will perform a map-based analysis on the cortical thickness or
volume or area, then use a cluster-wise correction for multiple
comparisons. If you want to go the ROI route, then you can test each ROI
separately (ie, compute a p-value for the ROI0, then bonferoni correct
the p-values for the nu
I tried that. Still no change.
And I tried running Qdec on all of my datasets. The problem occurs on all of
them.
Xiaojing
2010/7/9 Douglas N Greve
> That is strange. Can you change the FDR to something ridiculous like .5 and
> see if that changes things?
>
> Xiaojing Long wrote:
>
>> Hi
Hi,
I am trying to do left right reversal of surface with the instruction of
this link below.
http://surfer.nmr.mgh.harvard.edu/fswiki/LeftRightReversal?highlight=(reversal)|(Left)|(right)
After recon-all -subcortseg -s LRflipped-subject, I tried to see the
result with this command , 'tksurfer LR
Hi,
I am trying to do left right reversal of surface by following this link,
http://surfer.nmr.mgh.harvard.edu/fswiki/LeftRightReversal?highlight=(reversal)|(Left)|(right)
after recon-all -subcortseg -s LRflipped-subject", I tried to check the
result with tksurfer with 'tksurfer LRflipped-subject
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