Hi Lena,
Have you tried loading your labels as a segmentation volume? As long as
each of your labels has a different voxel value, you can load that label
volume as a segmentation, and then make a corresponding color look up
table making each label whatever color you want (as long as you can
fi
Dear All,
I checked the archives but couldn't get a complete answer. I performed group
analysis of cortical thickness using mri_glmfit. I am wondering how to report
the coordinates of regions where cortical thickness is significantly different,
i used FDR for multiple comparisons in tksurfer.
If you click on a point, it should tell you in the control window what
the talairach coordinates are
doug
Rajagopalan, Venkateswaran wrote:
>
> Dear All,
>
> I checked the archives but couldn't get a complete answer. I performed
> group analysis of cortical thickness using mri_glmfit. I am wond
Thanks Doug, but for instance in my result the inferiorparietal region is
significantly different in some areas but not in the entire region, so in this
case it will difficult because i have to move the cursor to regions where it is
significant and other vertex where it is not significant this
Hi all --
Is there a simple way to create an annotation for
frontal/temporal/occipital/parietal lobes based off the ?h.aparc.annot
files in a FS 'label' dir? Ideally speaking, I'd like to have a
?h.lobar.annot with corresponding lobar.annot.ctab.
Apologies if this question has come up before..
Hello, Bruce,
Thanks a lot! Currently, I am using Slicer 2.6.
Is the QA tool in VTKFreeSurfer Module the tool you mean to make flythrough
movies?
Thanks!
Guang
> Date: Thu, 4 Feb 2010 14:20:42 -0500
> From: fis...@nmr.mgh.harvard.edu
> To: freesurfer...@hotmail.com
> CC: freesurfer@nmr.mgh.ha
I don't know - you should ask the slicer folks.
Bruce
On Thu, 20 May 2010, Guang
Zeng wrote:
>
> Hello, Bruce,
>
> Thanks a lot! Currently, I am using Slicer 2.6.
> Is the QA tool in VTKFreeSurfer Module the tool you mean to make flythrough
> movies?
>
> Thanks!
> Guang
>
>> Date: Thu, 4 Feb 201
Dear Freesurfers,
I am trying to transform a Freesurfer-generated white
matter mask (ribbon) to FSL diffusion space in order to
use it as a stop-mask in fibertracking. I have tried to
coregister and reslice it to the normalized dti_FA with
SPM and I also tried to transform it with FSL-FLIRT and
FS
Try using bbregister to register the freesurfer anatomical to the low b
in the native diffusion space, then use mri_vol2vol or mri_label2vol to
map the ribbon to the native diffusion space.
doug
Theodor R?ber wrote:
> Dear Freesurfers,
>
> I am trying to transform a Freesurfer-generated white
>
