Thank you for your help. It again only ran for a minute. The difference this
time seemed to be that it asked me to rerun the command with -force.
I wrote out
s0964...@cric-0012:~$
SUBJECTS_DIR=~/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM
to start with.
Then I typed out what you se
1. you need to specify -all after recon-all (as Sita said)
2. recon-all is the program name and needs to be the first command
3. -force is needed if the directory exist, alternatively you can delete
the subject directory and start fresh again
recon-all -all -force -i ... -i ...
-Martin
On Tue, 2
On Tue, 2010-02-23 at 08:26 -0500, Martin Reuter wrote:
> 1. you need to specify -all after recon-all (as Sita said)
> 2. recon-all is the program name and needs to be the first command
> 3. -force is needed if the directory exist, alternatively you can delete
> the subject directory and start fres
Dear freesurfer experts:
We are using freesurfer to preform a cortical thickness analysis
between patients and controls. We plan to use the mean_thickness and
subject age as covariates. It's fine to analysis as group x age or
group x mean_thickness, respectively. But when we set design as group
x
you can divide the continuous variables by the standard deviation.
doug
lordowen wrote:
> Dear freesurfer experts:
>
> We are using freesurfer to preform a cortical thickness analysis
> between patients and controls. We plan to use the mean_thickness and
> subject age as covariates. It's fine to
Run
mri_info --vox2ras-tkr orig.mgz
This will give you a 4x4 matrix M. Construct a vector P = [R A S 1]'.
The index = inv(M)*P
doug
Guang Zeng wrote:
> Hello, there,
>
> I load lh.inflated of a subject using tksurfer,
> click a point (or vetex), then Click "Save Point")
>
> Meanwhile, I load t
Hi Freesurfers,
I have an issue with a job I launch on seychelles.
I get this error message:
/usr/local/freesurfer/nmr-std-env: line 98: syntax error near unexpected
token `('
/usr/local/freesurfer/nmr-std-env: line 98: ` set path = ( /usr/pubsw/bin
$path )'
/var/spool/PBS/mom_priv/jobs/1258634.s
Hi,
I have a question regarding creating a paradigm file and the command
mkanalysis-sess.
I am trying to analyze resting state data and wanted to know what the contents
of the paradigm file should be.
Also what would my mkanalysis-sess command be? Not sure what the -designtype
and other opti
Dear Professor Greve:
Thanks for your advisement. After re-value the covariates, the same
error report still popup. The value of age goes between 6.5-10.5
(origin SD =2.9), and mean_thickness goes around 31-35 (origin SD =
0.07). Can you give us some suggestions?
Any other comments also welcome a
