[Freesurfer] Mri_glmfit, paired analysis protocol

2010-01-20 Thread Stidd, Reva (NIH/NIMH) [F]
Hi there, I'm trying to compare a sample with a T1 and T2 for each subject using the paired analysis protocol. I've completed everything *except* for the mri_glmfit step without error. I think it might have to do with the way my second FSGD file was created/saved. The command I'm entering and the

Re: [Freesurfer] Mri_glmfit, paired analysis protocol

2010-01-20 Thread Douglas N Greve
Just add "1" after GroupDescriptorFile so that it reads "GroupDescriptorFile 1" dogu Stidd, Reva (NIH/NIMH) [F] wrote: > Hi there, > I'm trying to compare a sample with a T1 and T2 for each subject using the > paired analysis protocol. > I've completed everything *except* for the mri_glmfit st

[Freesurfer] flag error

2010-01-20 Thread Buchmann Andreas
Dear Freesurfer Experts, after a new installation of freesurfer, the command "tkmedit" worked, but with the command "recon-all -i ... -s ..." we ran into the following error: Flag i unrecognized. i /Users/michael/Desktop/K01.img s K01 Darwin Macintosh-3.local 9.8.0 Darwin Kernel Version 9.8.0: