Re: [Freesurfer] Recon-all -long

2009-11-25 Thread Martin Reuter
Hi Jürgen, mainly you are right. As there is no change in the first processing steps between the cross sectional and the longitudinal stream, it is sufficient, to simply copy that data from the cross sectional directories, instead of rerunning it. The -long stream starts being different in the sku

Re: [Freesurfer] script to check multiple cases with tksurfer

2009-11-25 Thread Martin Reuter
How about: setenv SUBJECTS " id1 id2 id3 .. " foreach s ($SUBJECTS) # do stuff echo $s tksurfer $s end (this is for cshell) Cheers, Martin On Tue, 2009-11-24 at 17:19 -0800, Mehul Sampat wrote: > Hi Folks, > > I would like to visually check the cortical parcellation for a large > num

Re: [Freesurfer] script to check multiple cases with tksurfer

2009-11-25 Thread Bruce Fischl
you can also write a tcl script to save snapshots to a file and invoke it with -tcl

[Freesurfer] Destrieux Atlas (aparc.a2009s.annot)

2009-11-25 Thread Dalwani, Manish
Hi Freesurfers, Where can I find documentation and labels for Destrieux Atlas? How can I download this new atlas? My stats folders for each subject has aparc.a2005s.stats. Can I generate the stats for the new atlas? Sincerely, Manish Dalwani Sr. PRA Univ. of CO