Lars Tjelta Westlye wrote:
> Hi,
>
> I have a couple of questions regarding mri_glmfit-sim (mc-z).
>
> 1. Is it correct that --sim-sign abs builds up a null distribution of max
> cluster sizes regardless of the direction of the effects in the simulated
> data while --sim-sign pos/neg only counts
I think you can also extract labels using the custom fill, then try using
label2patch to make it into a patch (it's old as the hills, but used to
work)
cheers
Bruce
On Thu, 5 Nov 2009, Douglas N Greve wrote:
> You can create a patch by cutting a plane. Select 3 vertices to define
> the plane, th
Hi:
Which is the error of the volumes that appears in aseg.stats ?... are
they quantifiable ?... Because I notice that the right-hippocampus (for
example) that appears in aseg.auto.mgz is bigger than the
right-hippocampus of T1.mgz image...
Sincerely,
--
Gonzalo Rojas Costa
Department
Hi Gonzalo,
sorry, I don't understand. What do you mean by "right-hippocampus of
T1.mgz"? T1.mgz isn't a label volume, it doesn't have a right-hippocampus
measure in it.
cheers
Bruce
On Thu, 5 Nov 2009, Gonzalo Rojas wrote:
> Hi:
>
> Which is the error of the volumes that appears in aseg.s
Hi Folks
In my dataset each MRI exam is 256*256*180.
I would like to convert wmparc.mgz back to 256*256*180.
Since this is the segmentation output, I think I should use set the resample
type to nearest and use a command like
mri_convert -rl mri/orig/001.mgz -rt nearest mri/wmparc.mgz mri/wmparc.
That looks correct to me.
Peace,
Matt.
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Mehul Sampat
Sent: Thursday, November 05, 2009 3:38 PM
To: Freesurfer Mailing List
Subject: [Freesurfer] reslicing question
Hi
that looks right to me
On Thu, 5 Nov 2009, Mehul Sampat wrote:
> Hi Folks
>
> In my dataset each MRI exam is 256*256*180.
> I would like to convert wmparc.mgz back to 256*256*180.
> Since this is the segmentation output, I think I should use set the resample
> type to nearest and use a command li
Hi Nick,
I was recently trying to redo something you had helped me out with
back in April (see below), but I now get this error:
ERROR: Option --seg unknown
The wiki page still says this option exists, but I'm guessing is outdated
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_annotation2label#Deta
