[Freesurfer] How to complete gracefully

Hi, I have a bunch of analyzes (about 30), for which recon-all -all terminates prematurely at mris_volmask (and core is created). On one case I ran the mris_volmask and the rest of analysis by executing commands manually, which went fine, but it's laborious. Is there quicker way to complete the

Re: [Freesurfer] How to complete gracefully

Hi Martin, -make all is what we would suggest. Is there any reason the timestamps would be wrong on your files to make make all rebuild everything? cheers, Bruce On Sun, 10 May 2009, Martin Kavec wrote: Hi, I have a bunch of analyzes (about 30), for which recon-all -all terminates prematu

Re: [Freesurfer] How to complete gracefully

Many thanks for so fast responce, Bruce! I will give -make all try again tomorrow on few of the latest "unsuccessful" completes. Thanks, Martin On Sunday 10 May 2009 22:07:58 Bruce Fischl wrote: > Hi Martin, > > -make all is what we would suggest. Is there any reason the timestamps > would be

[Freesurfer] tkmedit multiple orientation view

Hi All, Is it possible to start tkmedit with the multiple orientation view as default? Thank you, Attila ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] tkmedit multiple orientation view

you can put this in a tcl script: SetViewPreset 1 and execute it from the commandline with -tcl

[Freesurfer] FSL --> FreeSurfer

Hello all, I have group contrast fMRI activations analzyed by FSL Flame 1 that I want to extract individual thickness data for each subject from data processed by FreeSurfer? Is that possible and if so, how? Thanks! Vina ___ Freesurfer mailing list F