Re: [Freesurfer] annotation file and labels for fsaverage

2008-09-09 Thread Bruce Fischl
great, thanks Ron. Bruce On Tue, 9 Sep 2008, Ron Killiany wrote: I believe Sarah will be over at MGH on friday to begin finalizing this. --ron On Mon, Sep 8, 2008 at 9:31 PM, Bruce Fischl <[EMAIL PROTECTED]>wrote: Hi Dara, there is an insula label in the works (*lots* of people have asked

[Freesurfer] dicom image viewer

2008-09-09 Thread dahlia
Hi, What do people usually use to view dicom images, and how do I invoke this viewer? Thanks! Dahlia. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] dicom image viewer

2008-09-09 Thread Doug Greve
If you just want to view one image from one dicom file, then you can use mri_probedicom with the --view option. If you want to view it as a volume, then I'd convert it to nifti and view it in tkmedit, fslview, afni, spm, etc. [EMAIL PROTECTED] wrote: Hi, What do people usually use to vi

Re: [Freesurfer] dicom image viewer

2008-09-09 Thread Pedro Paulo de Magalhães Oliveira Junior
If you have a Mac I would recommend OsiriX If you are on a PC or Linux use Mricro. 2008/9/9 <[EMAIL PROTECTED]> > Hi, > > What do people usually use to view dicom images, and how do I invoke this > viewer? > > Thanks! > Dahlia. > ___ > Freesurfer mailin

Re: [Freesurfer] What is included in the ICV value

2008-09-09 Thread Pedro Paulo de Magalhães Oliveira Junior
I have included a script to export these values to a spreadsheet http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/Scripts/ppaulo/excelICV-aseg 2008/9/4 Bruce Fischl <[EMAIL PROTECTED]> > p.s. we probably do something similar to the "loose-fitting mask" as we > only use non-brain locatio

Re: [Freesurfer] dicom image viewer

2008-09-09 Thread Paul Raines
We do appear to have Mricro installed at the Martinos Center at /usr/pubsw/packages/mricro/current/ On Tue, 9 Sep 2008, Pedro Paulo de Magalhães Oliveira Junior wrote: If you have a Mac I would recommend OsiriX If you are on a PC or Linux use Mricro. 2008/9/9 <[EMAIL PROTECTED]> Hi, What d

Re: [Freesurfer] dicom image viewer

2008-09-09 Thread Michael Harms
mricro is a handy viewer for instances where you've already used another tool to create an explicit volume (e.g., Analyze, nifti format, etc). For instances where you have a bunch of unorganized DICOMs, you may be interested in trying out the DicomBrowser available from the Neuroinformatics Gro

[Freesurfer] 3 fast questions on freesurfer

2008-09-09 Thread dfwang
Dear Freesurfer Users, I have 3 fast questions on freesurfer. Any comments are welcome! 1. how to calculate the GM/WM/CSF volume in freesurfer? 2. how to calculat the volume of the frontal lobe? 3. how to convert the file format from .mgz to .mnc or analyze? Thanks in advance. Vincent__