Hi there,
If you run recon-all, and then do some edits, for example control
points, then the tutorial says you do:
recon-all -autorecon2-cp -autorecon3 -subjid subject4_before
Similarly for white matter:
recon-all -autorecon2-wm -autorecon3 -subjid 111_manual_edits_before
and similarly for br
I think at least part (1) of Eliezer's list is possible with the
existing content on the FS wiki. Specifically, now that the wiki is
using MoinMoin v1.6 it is possible to export pages as latex (see
http://moinmo.in/FormatterMarket for the formatter plugin) which would
be a very fast way to put
You only need to do:
recon-all -autorecon2-cp -autorecon3 -subjid subject3_before
-autorecon2-cp will do all the steps in -wm and -pial
doug
Matt Clarkson wrote:
Hi there,
If you run recon-all, and then do some edits, for example control
points, then the tutorial says you do:
recon-all
Hi Doug and all,
When i run
selxavg3-sess -analysis LD-analysis -s LD-functional
i seem to get errors in some other files, The output is as follows:
[balaji-goparajus-computer:~/Desktop/subjectdata] balajigo% selxavg3-sess
-analysis LD-analysis -s LD-functional
--
Looks like a problem with loading the motion correction regressors. Can
you try it with out them?
Balaji Goparaju wrote:
Hi Doug and all,
When i run
selxavg3-sess -analysis LD-analysis -s LD-functional
i seem to get errors in some other files, The output is as follows:
[balaji-goparajus-c
Hi all,
I need data which are in the aseg.stats file (which is in the stats file). Some
patients haven't the aseg.stats file in the stats file, so does somebody know
where I can find the aseg.stats file?
Thanks
Irene Mattisi
Multiple Sclerosis Centre of Padova, Italy
___
That's a great idea. I know that would have been helpful for me when
doing my first run-through.
Eliezer
On Aug 14, 2008, at 7:00 AM, Pádraig Kitterick wrote:
I think at least part (1) of Eliezer's list is possible with the
existing content on the FS wiki. Specifically, now that the wiki is
I agree. We have out hands full writing unit/system tests, developing new
algorithms and tracking down bugs. We try to keep the docs up to date,
but it's pretty hard to do. If people were willing to contribute short
pieces of documentation for different tools that they are familiar with,
we can
Irene,
Have you checked if these patients who don`t have aseg.stats in their stats
directory have the recon-all finished correctly.
Best Regards
Pedro Paulo Jr
2008/8/14 irene <[EMAIL PROTECTED]>
> Hi all,
>
> I need data which are in the aseg.stats file (which is in the stats file).
> Some pa
Dear List,
I am testing within qdec an analysis of the subcortical volumes and using for
this the subjects of the buckner_data.( First of all i am not sure it this is
already implemented within freesurfer - in the Design card it says something
like 'Volume-Based not yet implemented' )
Well, i
Thomas,
The term 'volume' can get a little confusing. As you noticed, volume-
based analysis is not yet implemented in qdec. What this will be is to
take a freesurfer volume measure, like hippocampal volume, and use that
as the independent variable to regress against, say, age. The output
would
It is a defect of some kind. Use the save point / goto feature of
tksurfer and tkmedit, as described in the tutorial, to see discover the
cause of the defect. That is, click on a point on that needle in
tksurfer, click save point, then click goto point in tkmedit, after
loading the brainmask and
Actually, it wouldn't be dura because of the location. Load the
parcellation data, and if its in the 'Unknown' region, it can be
ignored.
Nick
On Thu, 2008-08-14 at 23:00 -0400, Nick Schmansky wrote:
> It is a defect of some kind. Use the save point / goto feature of
> tksurfer and tkmedit, a
actually I wouldn't worry about it. It's not cortical. Might be the optic
radiation, but it will have no effect on anything you want to do. If you
don't like the way it looks you could erase the wm voxels that make it up,
but I wouldn't bother.
On Thu, 14 Aug 2008, Nick Schmansky wrote:
It i
14 matches
Mail list logo
