Hi Krish,
I am afraid we had no joy with either option.
No one in lab can get access, we have used both Mozilla Firefox, and Internet
Explorer, neither can establish a connection.
We never had a problem before. I have tried making changes to my computer
firewall, again no joy.
Liat
-
so you can't get to:
https://surfer.nmr.mgh.harvard.edu/fswiki
or
http://surfer.nmr.mgh.harvard.edu/fswiki
I have no problem with either site...
Bruce
On Wed, 11 Jun 2008, Liat Levita
wrote:
Hi Krish,
I am afraid we had no joy with either option.
No one in lab can get access, we have u
Perhaps it is a DNS issue? You could try bypassing DNS by replacing
the hostname with the ip in the URL:
http://132.183.202.158/fswiki
or
https://132.183.202.158/fswiki
If that works, then the problem is likely with DNS at Cornell, in
which case you'll need to contact your network helpdesk.
Hi,
my name is giovanni, hope you can help me...
i started the command
recon-all -s patient_lyp -all
on a folder containing the data of one of my patients...
after few minutes I got this error message:
###
Thu Jun 5 08:
Hi Giovonni,
it stopped after detecting an unlikely transform, so no surfaces were
created. You could run
recon-all -s patient_lyp -all -notal-check
which will skip the checking of the talairach xform, but if it is really
wrong then things may feel. You can still use tkregister2 to do the
Thank you, Doug. This is good to know. Is this a general rule? As in,
in general, is it bad to change the orientation unless it's incorrect?
If it is not, what would be an appropriate tool to use in conjunction
with mri_convert to perform this operation?
*edit* Searching the archives, I fou
>From a QC perspective, everything is fine. We aren't necessarily getting
any errors. All brains are taking this long, not just one.
Marlisa
> Have you looked at the brains? Is the one that takes a week correct, or
> does it have cerebellum or skull attached, or some other failure?
>
> cheers,
>
Marlisa,
The memory ( RAM) you have? My guess is if Freesurfer uses significant
amount of swap, it becomes slow. Is it different from other 2 machines
or the same order of magnitude?
If time permits, could you send the "Hardware Overview" information?
( Apple Icon in menubar->About this M
Hi Krish,
So all the machines have 4 GB of memory. However, the faster machine has 6
(4 x 512MB, 2 x1GB), whereas the slower ones are 1GB in 4. Possibly that's
the bottleneck. All are 667 MHz regardless of machine. I'm thinking this
could be the issue.
Marlisa
> Marlisa,
>
> The memory ( RAM) y
Hi,
I started to use Freesufer and finished the first step of recon-all. When I
checked the talairach transform, the tutorial said there should be green lines
which can be turned on or off by clicking the image window and hitting the s
key. But it didn't work for me. Is this because the g
James Kyle wrote:
Thank you, Doug. This is good to know. Is this a general rule? As in,
in general, is it bad to change the orientation unless it's incorrect?
It is bad to change what the header says the orientation is without
changing the actual orientation of the pixel data to match it.
Hello Surfers,
I just wanted to confirm what I am interpreting in some analysis in qdec.
Some fellow techs here are running qdec on a group of controls, TBI and
PTSD subjects and are trying to figure out what exactly the color scale
is telling us. From the mail archive I understand that the blue
Yes, the green lines are the surface, so if you don't have a surface,
you won't see green lines. You should that the volumes "line up". For
talairach, this is to mostly make sure that the edges of the brains are
about the same place and that the orientations are about the same.
doug
karlkarl w
Sky,
Yes, your assumption is correct. The colors are relative to the first
variable in the description, as you have described.
As a side note, the .levels file is not strictly necessary
(thats the file that specifies your discrete factor names), since the
loader will figure out discrete factors
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